miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 690 0.68 0.949645
Target:  5'- cAGCG-C-UUUCCGCG-CC-CGCCGGGa -3'
miRNA:   3'- -UUGCaGaAAAGGCGUaGGuGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 12937 0.66 0.98046
Target:  5'- aAGCGUUUgcaacagCGCAUcCCGCGUCGGGa -3'
miRNA:   3'- -UUGCAGAaaag---GCGUA-GGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 15682 0.66 0.98046
Target:  5'- cGCGaCUgggUCCGCAaCCACGUCGa- -3'
miRNA:   3'- uUGCaGAaa-AGGCGUaGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 23076 0.73 0.786499
Target:  5'- cGCGUCUguggugUCUGCGUCCgugGCCGGGc -3'
miRNA:   3'- uUGCAGAaa----AGGCGUAGGug-CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 24539 0.69 0.936191
Target:  5'- cAACGUCg--UCCGC-UCCACgaGCUGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGuAGGUG--CGGCCu -5'
14023 3' -53.9 NC_003521.1 + 26140 0.71 0.854026
Target:  5'- cAACGUCguggucUUCCGCGUCUACggacugcugcuGCUGGAg -3'
miRNA:   3'- -UUGCAGaa----AAGGCGUAGGUG-----------CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 26599 0.67 0.970552
Target:  5'- --gGUCUUcgugggCUGCAUCCugGCCGu- -3'
miRNA:   3'- uugCAGAAaa----GGCGUAGGugCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 27685 0.67 0.97685
Target:  5'- cAACGUCUUcaguucgcugcggCCGCA-CCACGCCa-- -3'
miRNA:   3'- -UUGCAGAAaa-----------GGCGUaGGUGCGGccu -5'
14023 3' -53.9 NC_003521.1 + 30060 0.67 0.970552
Target:  5'- uACGUCUcagUCUGUgccGUCCcCGCCGGc -3'
miRNA:   3'- uUGCAGAaa-AGGCG---UAGGuGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 38787 0.68 0.949645
Target:  5'- aGACGUCguggCUGCAUU--CGCCGGAc -3'
miRNA:   3'- -UUGCAGaaaaGGCGUAGguGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 44111 0.66 0.98436
Target:  5'- -uCGUCaagaUCUGCAUCCugGCCa-- -3'
miRNA:   3'- uuGCAGaaa-AGGCGUAGGugCGGccu -5'
14023 3' -53.9 NC_003521.1 + 46529 0.66 0.982491
Target:  5'- gGGCGUCUUcUCCaggcGCAccagggCCucGCGCCGGGu -3'
miRNA:   3'- -UUGCAGAAaAGG----CGUa-----GG--UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 48786 0.71 0.861655
Target:  5'- cGCGUCUg--CCGCG--CACGCCGGc -3'
miRNA:   3'- uUGCAGAaaaGGCGUagGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 50442 0.67 0.975876
Target:  5'- -uCGUCgugggCUGUAUCgACGUCGGAg -3'
miRNA:   3'- uuGCAGaaaa-GGCGUAGgUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 53663 0.7 0.890095
Target:  5'- cACGUUgcUUCCGCuccugCCGcCGCCGGGc -3'
miRNA:   3'- uUGCAGaaAAGGCGua---GGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 65761 0.67 0.964434
Target:  5'- gGACG-CUgacgggCCGCAUCaCAccgcCGCCGGAc -3'
miRNA:   3'- -UUGCaGAaaa---GGCGUAG-GU----GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 70692 0.71 0.834924
Target:  5'- cGGCGUCUgcgCCGCAagcugcgucggcgCCuGCGCCGGAu -3'
miRNA:   3'- -UUGCAGAaaaGGCGUa------------GG-UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 72077 0.69 0.926061
Target:  5'- cGCGUCcgacCCGCAaCCGCGUCGGc -3'
miRNA:   3'- uUGCAGaaaaGGCGUaGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 74068 0.67 0.97331
Target:  5'- gAugGUCga--CCGCAUCCA-GCUGGu -3'
miRNA:   3'- -UugCAGaaaaGGCGUAGGUgCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 77591 0.66 0.98046
Target:  5'- uGAUGUUcg-UCCGCgaGUCCcaggcCGCCGGAg -3'
miRNA:   3'- -UUGCAGaaaAGGCG--UAGGu----GCGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.