miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 234487 0.69 0.940906
Target:  5'- -uCGUCU--UCCGCGgaUCCuauCGCCGGc -3'
miRNA:   3'- uuGCAGAaaAGGCGU--AGGu--GCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 164498 0.7 0.892749
Target:  5'- -cCGUCgccUCCGCAgcugucgccgccaccUCCGCuGCCGGAc -3'
miRNA:   3'- uuGCAGaaaAGGCGU---------------AGGUG-CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 89287 0.69 0.914996
Target:  5'- gAugGUacaacCCGCGUCCGCGCCGc- -3'
miRNA:   3'- -UugCAgaaaaGGCGUAGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 128201 0.69 0.920645
Target:  5'- cAGCGUCUUgagCGCGUCCACGaaguccaucuuCUGGAu -3'
miRNA:   3'- -UUGCAGAAaagGCGUAGGUGC-----------GGCCU- -5'
14023 3' -53.9 NC_003521.1 + 72077 0.69 0.926061
Target:  5'- cGCGUCcgacCCGCAaCCGCGUCGGc -3'
miRNA:   3'- uUGCAGaaaaGGCGUaGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 85212 0.69 0.926061
Target:  5'- uGCGUCac--CCgGCG-CCGCGCCGGAc -3'
miRNA:   3'- uUGCAGaaaaGG-CGUaGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 87238 0.69 0.926061
Target:  5'- uGACGUUga--CCGUGUCCuCGCCGGu -3'
miRNA:   3'- -UUGCAGaaaaGGCGUAGGuGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 113284 0.69 0.926061
Target:  5'- cAGCGUCU---UCGC-UCCGCGCuCGGGc -3'
miRNA:   3'- -UUGCAGAaaaGGCGuAGGUGCG-GCCU- -5'
14023 3' -53.9 NC_003521.1 + 129572 0.69 0.926061
Target:  5'- cGACGauggCUgcUCCGCcgcgCCGCGCCGGc -3'
miRNA:   3'- -UUGCa---GAaaAGGCGua--GGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 53663 0.7 0.890095
Target:  5'- cACGUUgcUUCCGCuccugCCGcCGCCGGGc -3'
miRNA:   3'- uUGCAGaaAAGGCGua---GGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 226911 0.7 0.883307
Target:  5'- cAGCG-CggccUCCGCGgcccccUCCGCGCCGGGc -3'
miRNA:   3'- -UUGCaGaaa-AGGCGU------AGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 226832 0.7 0.883307
Target:  5'- uGGgGUCcucgcCCGCcgCCGCGCCGGGc -3'
miRNA:   3'- -UUgCAGaaaa-GGCGuaGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 123473 0.75 0.680454
Target:  5'- gGGCGUCagcUCCGUGUCCGuCGCCGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGUAGGU-GCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 88449 0.74 0.690464
Target:  5'- aGACGUCg--UCCGCcUCgGCGUCGGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGuAGgUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 156068 0.73 0.777361
Target:  5'- cAACGUCg---CCGCcgCCGCGCCcGAg -3'
miRNA:   3'- -UUGCAGaaaaGGCGuaGGUGCGGcCU- -5'
14023 3' -53.9 NC_003521.1 + 187468 0.72 0.7955
Target:  5'- -cUGUCggccccUCCGCcgCCGCGCCGGc -3'
miRNA:   3'- uuGCAGaaa---AGGCGuaGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 203313 0.72 0.821607
Target:  5'- gGACGUCgcugaugUCCGCGggCCcgaaaACGCCGGGg -3'
miRNA:   3'- -UUGCAGaaa----AGGCGUa-GG-----UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 143085 0.72 0.829983
Target:  5'- uACGUCggaUUCGCAgCCGcCGCCGGAg -3'
miRNA:   3'- uUGCAGaaaAGGCGUaGGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 70692 0.71 0.834924
Target:  5'- cGGCGUCUgcgCCGCAagcugcgucggcgCCuGCGCCGGAu -3'
miRNA:   3'- -UUGCAGAaaaGGCGUa------------GG-UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 191216 0.71 0.854025
Target:  5'- -gUGUCc--UCCGCGUCCccaGCGCCGGu -3'
miRNA:   3'- uuGCAGaaaAGGCGUAGG---UGCGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.