Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14023 | 3' | -53.9 | NC_003521.1 | + | 179029 | 1.07 | 0.00946 |
Target: 5'- cAACGUCUUUUCCGCAUCCACGCCGGAg -3' miRNA: 3'- -UUGCAGAAAAGGCGUAGGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 137596 | 0.68 | 0.961064 |
Target: 5'- ---uUCUUgggCCGCcgCCugGCCGGc -3' miRNA: 3'- uugcAGAAaa-GGCGuaGGugCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 186307 | 0.67 | 0.970552 |
Target: 5'- cAGCGgCg---CCGUgcagauccugGUCCACGCCGGGc -3' miRNA: 3'- -UUGCaGaaaaGGCG----------UAGGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 123239 | 0.66 | 0.987638 |
Target: 5'- gGugGUCguagcgCCGCGcCCaguagACGCCGGGa -3' miRNA: 3'- -UugCAGaaaa--GGCGUaGG-----UGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 26140 | 0.71 | 0.854026 |
Target: 5'- cAACGUCguggucUUCCGCGUCUACggacugcugcuGCUGGAg -3' miRNA: 3'- -UUGCAGaa----AAGGCGUAGGUG-----------CGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 48786 | 0.71 | 0.861655 |
Target: 5'- cGCGUCUg--CCGCG--CACGCCGGc -3' miRNA: 3'- uUGCAGAaaaGGCGUagGUGCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 129454 | 0.69 | 0.920645 |
Target: 5'- -cCGUCg---CCGCuaGUCCcgGCGCCGGGa -3' miRNA: 3'- uuGCAGaaaaGGCG--UAGG--UGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 176724 | 0.69 | 0.936191 |
Target: 5'- uGACGuUCUggaagcCCGCcUCCAgGCCGGGc -3' miRNA: 3'- -UUGC-AGAaaa---GGCGuAGGUgCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 221758 | 0.68 | 0.94539 |
Target: 5'- cAGCGUCagcgUCUGCG-CCGCGCCGc- -3' miRNA: 3'- -UUGCAGaaa-AGGCGUaGGUGCGGCcu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 185647 | 0.68 | 0.953673 |
Target: 5'- --gGUCgugUUUCaGCGUCCGCGCCcGAg -3' miRNA: 3'- uugCAGa--AAAGgCGUAGGUGCGGcCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 38787 | 0.68 | 0.949645 |
Target: 5'- aGACGUCguggCUGCAUU--CGCCGGAc -3' miRNA: 3'- -UUGCAGaaaaGGCGUAGguGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 185895 | 0.69 | 0.940906 |
Target: 5'- -cCGUCacUUUUCUGC--CCACGCCGGc -3' miRNA: 3'- uuGCAG--AAAAGGCGuaGGUGCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 212502 | 0.75 | 0.660326 |
Target: 5'- cGGCGg----UCCGCAggCCGCGCCGGGg -3' miRNA: 3'- -UUGCagaaaAGGCGUa-GGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 171432 | 0.68 | 0.949645 |
Target: 5'- cGCGUCUg--CUGCGUCuCACGUggcaCGGAc -3' miRNA: 3'- uUGCAGAaaaGGCGUAG-GUGCG----GCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 23076 | 0.73 | 0.786499 |
Target: 5'- cGCGUCUguggugUCUGCGUCCgugGCCGGGc -3' miRNA: 3'- uUGCAGAaa----AGGCGUAGGug-CGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 24539 | 0.69 | 0.936191 |
Target: 5'- cAACGUCg--UCCGC-UCCACgaGCUGGc -3' miRNA: 3'- -UUGCAGaaaAGGCGuAGGUG--CGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 180859 | 0.68 | 0.953673 |
Target: 5'- uGACGUCgcggaUuuGU-UCCGCGCCGGGn -3' miRNA: 3'- -UUGCAGaaa--AggCGuAGGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 26599 | 0.67 | 0.970552 |
Target: 5'- --gGUCUUcgugggCUGCAUCCugGCCGu- -3' miRNA: 3'- uugCAGAAaa----GGCGUAGGugCGGCcu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 180887 | 0.71 | 0.838183 |
Target: 5'- -cUGUUga-UCgGCGUCCACGUCGGAg -3' miRNA: 3'- uuGCAGaaaAGgCGUAGGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 103445 | 0.7 | 0.903002 |
Target: 5'- cGCGUCUgcaccagUUCGCGUCCGCggauGCgGGAg -3' miRNA: 3'- uUGCAGAaa-----AGGCGUAGGUG----CGgCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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