miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 179029 1.07 0.00946
Target:  5'- cAACGUCUUUUCCGCAUCCACGCCGGAg -3'
miRNA:   3'- -UUGCAGAAAAGGCGUAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 86039 0.75 0.640109
Target:  5'- uGACGUUgaggUUCCGC-UCCACGCCGu- -3'
miRNA:   3'- -UUGCAGaa--AAGGCGuAGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 212502 0.75 0.660326
Target:  5'- cGGCGg----UCCGCAggCCGCGCCGGGg -3'
miRNA:   3'- -UUGCagaaaAGGCGUa-GGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 123473 0.75 0.680454
Target:  5'- gGGCGUCagcUCCGUGUCCGuCGCCGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGUAGGU-GCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 88449 0.74 0.690464
Target:  5'- aGACGUCg--UCCGCcUCgGCGUCGGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGuAGgUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 156068 0.73 0.777361
Target:  5'- cAACGUCg---CCGCcgCCGCGCCcGAg -3'
miRNA:   3'- -UUGCAGaaaaGGCGuaGGUGCGGcCU- -5'
14023 3' -53.9 NC_003521.1 + 23076 0.73 0.786499
Target:  5'- cGCGUCUguggugUCUGCGUCCgugGCCGGGc -3'
miRNA:   3'- uUGCAGAaa----AGGCGUAGGug-CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 187468 0.72 0.7955
Target:  5'- -cUGUCggccccUCCGCcgCCGCGCCGGc -3'
miRNA:   3'- uuGCAGaaa---AGGCGuaGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 203313 0.72 0.821607
Target:  5'- gGACGUCgcugaugUCCGCGggCCcgaaaACGCCGGGg -3'
miRNA:   3'- -UUGCAGaaa----AGGCGUa-GG-----UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 143085 0.72 0.829983
Target:  5'- uACGUCggaUUCGCAgCCGcCGCCGGAg -3'
miRNA:   3'- uUGCAGaaaAGGCGUaGGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 70692 0.71 0.834924
Target:  5'- cGGCGUCUgcgCCGCAagcugcgucggcgCCuGCGCCGGAu -3'
miRNA:   3'- -UUGCAGAaaaGGCGUa------------GG-UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 180887 0.71 0.838183
Target:  5'- -cUGUUga-UCgGCGUCCACGUCGGAg -3'
miRNA:   3'- uuGCAGaaaAGgCGUAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 191216 0.71 0.854025
Target:  5'- -gUGUCc--UCCGCGUCCccaGCGCCGGu -3'
miRNA:   3'- uuGCAGaaaAGGCGUAGG---UGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 26140 0.71 0.854026
Target:  5'- cAACGUCguggucUUCCGCGUCUACggacugcugcuGCUGGAg -3'
miRNA:   3'- -UUGCAGaa----AAGGCGUAGGUG-----------CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 48786 0.71 0.861655
Target:  5'- cGCGUCUg--CCGCG--CACGCCGGc -3'
miRNA:   3'- uUGCAGAaaaGGCGUagGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 226911 0.7 0.883307
Target:  5'- cAGCG-CggccUCCGCGgcccccUCCGCGCCGGGc -3'
miRNA:   3'- -UUGCaGaaa-AGGCGU------AGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 226832 0.7 0.883307
Target:  5'- uGGgGUCcucgcCCGCcgCCGCGCCGGGc -3'
miRNA:   3'- -UUgCAGaaaa-GGCGuaGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 53663 0.7 0.890095
Target:  5'- cACGUUgcUUCCGCuccugCCGcCGCCGGGc -3'
miRNA:   3'- uUGCAGaaAAGGCGua---GGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 164498 0.7 0.892749
Target:  5'- -cCGUCgccUCCGCAgcugucgccgccaccUCCGCuGCCGGAc -3'
miRNA:   3'- uuGCAGaaaAGGCGU---------------AGGUG-CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 103445 0.7 0.903002
Target:  5'- cGCGUCUgcaccagUUCGCGUCCGCggauGCgGGAg -3'
miRNA:   3'- uUGCAGAaa-----AGGCGUAGGUG----CGgCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.