miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 192481 0.68 0.953673
Target:  5'- cGGCGgucggCUgaucaCCGUGUCCACGCUGGu -3'
miRNA:   3'- -UUGCa----GAaaa--GGCGUAGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 171432 0.68 0.949645
Target:  5'- cGCGUCUg--CUGCGUCuCACGUggcaCGGAc -3'
miRNA:   3'- uUGCAGAaaaGGCGUAG-GUGCG----GCCU- -5'
14023 3' -53.9 NC_003521.1 + 38787 0.68 0.949645
Target:  5'- aGACGUCguggCUGCAUU--CGCCGGAc -3'
miRNA:   3'- -UUGCAGaaaaGGCGUAGguGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 690 0.68 0.949645
Target:  5'- cAGCG-C-UUUCCGCG-CC-CGCCGGGa -3'
miRNA:   3'- -UUGCaGaAAAGGCGUaGGuGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 239014 0.68 0.949645
Target:  5'- aGACGUCguggCUGCAUU--CGCCGGAc -3'
miRNA:   3'- -UUGCAGaaaaGGCGUAGguGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 200917 0.68 0.949645
Target:  5'- cAGCG-C-UUUCCGCG-CC-CGCCGGGa -3'
miRNA:   3'- -UUGCaGaAAAGGCGUaGGuGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 221758 0.68 0.94539
Target:  5'- cAGCGUCagcgUCUGCG-CCGCGCCGc- -3'
miRNA:   3'- -UUGCAGaaa-AGGCGUaGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 234487 0.69 0.940906
Target:  5'- -uCGUCU--UCCGCGgaUCCuauCGCCGGc -3'
miRNA:   3'- uuGCAGAaaAGGCGU--AGGu--GCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 185895 0.69 0.940906
Target:  5'- -cCGUCacUUUUCUGC--CCACGCCGGc -3'
miRNA:   3'- uuGCAG--AAAAGGCGuaGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 176724 0.69 0.936191
Target:  5'- uGACGuUCUggaagcCCGCcUCCAgGCCGGGc -3'
miRNA:   3'- -UUGC-AGAaaa---GGCGuAGGUgCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 24539 0.69 0.936191
Target:  5'- cAACGUCg--UCCGC-UCCACgaGCUGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGuAGGUG--CGGCCu -5'
14023 3' -53.9 NC_003521.1 + 72077 0.69 0.926061
Target:  5'- cGCGUCcgacCCGCAaCCGCGUCGGc -3'
miRNA:   3'- uUGCAGaaaaGGCGUaGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 129572 0.69 0.926061
Target:  5'- cGACGauggCUgcUCCGCcgcgCCGCGCCGGc -3'
miRNA:   3'- -UUGCa---GAaaAGGCGua--GGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 113284 0.69 0.926061
Target:  5'- cAGCGUCU---UCGC-UCCGCGCuCGGGc -3'
miRNA:   3'- -UUGCAGAaaaGGCGuAGGUGCG-GCCU- -5'
14023 3' -53.9 NC_003521.1 + 87238 0.69 0.926061
Target:  5'- uGACGUUga--CCGUGUCCuCGCCGGu -3'
miRNA:   3'- -UUGCAGaaaaGGCGUAGGuGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 85212 0.69 0.926061
Target:  5'- uGCGUCac--CCgGCG-CCGCGCCGGAc -3'
miRNA:   3'- uUGCAGaaaaGG-CGUaGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 128201 0.69 0.920645
Target:  5'- cAGCGUCUUgagCGCGUCCACGaaguccaucuuCUGGAu -3'
miRNA:   3'- -UUGCAGAAaagGCGUAGGUGC-----------GGCCU- -5'
14023 3' -53.9 NC_003521.1 + 129454 0.69 0.920645
Target:  5'- -cCGUCg---CCGCuaGUCCcgGCGCCGGGa -3'
miRNA:   3'- uuGCAGaaaaGGCG--UAGG--UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 89287 0.69 0.914996
Target:  5'- gAugGUacaacCCGCGUCCGCGCCGc- -3'
miRNA:   3'- -UugCAgaaaaGGCGUAGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 103445 0.7 0.903002
Target:  5'- cGCGUCUgcaccagUUCGCGUCCGCggauGCgGGAg -3'
miRNA:   3'- uUGCAGAaa-----AGGCGUAGGUG----CGgCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.