miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 102499 0.67 0.975876
Target:  5'- -cCGUCgcgcagCCGCAggUCCAUGUCGGc -3'
miRNA:   3'- uuGCAGaaaa--GGCGU--AGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 50442 0.67 0.975876
Target:  5'- -uCGUCgugggCUGUAUCgACGUCGGAg -3'
miRNA:   3'- uuGCAGaaaa-GGCGUAGgUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 208013 0.67 0.975876
Target:  5'- uACGUCUUUUCgGaCcgCCGuaUGCUGGAg -3'
miRNA:   3'- uUGCAGAAAAGgC-GuaGGU--GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 126873 0.67 0.975876
Target:  5'- -cUGUCUgccuccUCCGUGUCgACGCCGaGAc -3'
miRNA:   3'- uuGCAGAaa----AGGCGUAGgUGCGGC-CU- -5'
14023 3' -53.9 NC_003521.1 + 148823 0.67 0.97331
Target:  5'- cGCGcCUcg-CCGCucccgcuccGUUCGCGCCGGAu -3'
miRNA:   3'- uUGCaGAaaaGGCG---------UAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 111855 0.67 0.97331
Target:  5'- -uCGUCuUUUUCCaGCG-CCACGCCGc- -3'
miRNA:   3'- uuGCAG-AAAAGG-CGUaGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 74068 0.67 0.97331
Target:  5'- gAugGUCga--CCGCAUCCA-GCUGGu -3'
miRNA:   3'- -UugCAGaaaaGGCGUAGGUgCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 186307 0.67 0.970552
Target:  5'- cAGCGgCg---CCGUgcagauccugGUCCACGCCGGGc -3'
miRNA:   3'- -UUGCaGaaaaGGCG----------UAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 205875 0.67 0.970552
Target:  5'- aGACGUCUa--CgGUAUCCACGUCGa- -3'
miRNA:   3'- -UUGCAGAaaaGgCGUAGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 30060 0.67 0.970552
Target:  5'- uACGUCUcagUCUGUgccGUCCcCGCCGGc -3'
miRNA:   3'- uUGCAGAaa-AGGCG---UAGGuGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 26599 0.67 0.970552
Target:  5'- --gGUCUUcgugggCUGCAUCCugGCCGu- -3'
miRNA:   3'- uugCAGAAaa----GGCGUAGGugCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 118211 0.67 0.967595
Target:  5'- gAGCG-CgcggCCGCcgCCGuCGCCGGGg -3'
miRNA:   3'- -UUGCaGaaaaGGCGuaGGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 65761 0.67 0.964434
Target:  5'- gGACG-CUgacgggCCGCAUCaCAccgcCGCCGGAc -3'
miRNA:   3'- -UUGCaGAaaa---GGCGUAG-GU----GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 234336 0.68 0.961064
Target:  5'- -cCGUCa---CCGCcUCCGCuGCCGGAc -3'
miRNA:   3'- uuGCAGaaaaGGCGuAGGUG-CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 232085 0.68 0.961064
Target:  5'- cGCGUCUcguuUUUCCGCGUCCcCGUuacacgCGGu -3'
miRNA:   3'- uUGCAGA----AAAGGCGUAGGuGCG------GCCu -5'
14023 3' -53.9 NC_003521.1 + 115043 0.68 0.961064
Target:  5'- uGCG-CUUcgaUUuuGgGUCCACGUCGGAg -3'
miRNA:   3'- uUGCaGAA---AAggCgUAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 137596 0.68 0.961064
Target:  5'- ---uUCUUgggCCGCcgCCugGCCGGc -3'
miRNA:   3'- uugcAGAAaa-GGCGuaGGugCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 149269 0.68 0.960011
Target:  5'- cAUGUCg-UUCCGCGUCgGCGCCcacaaguacgugcuGGAg -3'
miRNA:   3'- uUGCAGaaAAGGCGUAGgUGCGG--------------CCU- -5'
14023 3' -53.9 NC_003521.1 + 192481 0.68 0.953673
Target:  5'- cGGCGgucggCUgaucaCCGUGUCCACGCUGGu -3'
miRNA:   3'- -UUGCa----GAaaa--GGCGUAGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 185647 0.68 0.953673
Target:  5'- --gGUCgugUUUCaGCGUCCGCGCCcGAg -3'
miRNA:   3'- uugCAGa--AAAGgCGUAGGUGCGGcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.