Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14023 | 5' | -58.4 | NC_003521.1 | + | 240570 | 0.7 | 0.666824 |
Target: 5'- gGUCCCGGgggGugGGGGggUguuuuuGGCgGggGg -3' miRNA: 3'- -CAGGGCCa--CugCCCCuuG------CCGaCuuU- -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 198312 | 0.69 | 0.75295 |
Target: 5'- uUCCCuGGggGugGGGGAugGGCg---- -3' miRNA: 3'- cAGGG-CCa-CugCCCCUugCCGacuuu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 197277 | 0.73 | 0.520926 |
Target: 5'- --gCCGGcGGCGGGGAGCGGgaGGGc -3' miRNA: 3'- cagGGCCaCUGCCCCUUGCCgaCUUu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 187935 | 0.66 | 0.894025 |
Target: 5'- aGUCCUGGUcgcguucggcguacGACGGacuGcACGGCUGGAAg -3' miRNA: 3'- -CAGGGCCA--------------CUGCCc--CuUGCCGACUUU- -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 186928 | 0.75 | 0.422101 |
Target: 5'- --gCCGGUGGCGGGGGcgGCGGC-GAAc -3' miRNA: 3'- cagGGCCACUGCCCCU--UGCCGaCUUu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 179065 | 1.05 | 0.004562 |
Target: 5'- gGUCCCGGUGACGGGGAACGGCUGAAAa -3' miRNA: 3'- -CAGGGCCACUGCCCCUUGCCGACUUU- -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 163228 | 0.69 | 0.75295 |
Target: 5'- -gCCCGGUGACGuGGGuuCGGCc---- -3' miRNA: 3'- caGGGCCACUGC-CCCuuGCCGacuuu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 155241 | 0.69 | 0.75295 |
Target: 5'- aGUCCgUGGUGGuggUGGGGGGCGGCg---- -3' miRNA: 3'- -CAGG-GCCACU---GCCCCUUGCCGacuuu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 150015 | 0.71 | 0.657019 |
Target: 5'- -cCCCGGgGAaggGGGGGGgGGCUGggGa -3' miRNA: 3'- caGGGCCaCUg--CCCCUUgCCGACuuU- -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 148969 | 0.69 | 0.73429 |
Target: 5'- cGUCCUGGUccgccgcccugGAgGGGGGAUGGgaGAGc -3' miRNA: 3'- -CAGGGCCA-----------CUgCCCCUUGCCgaCUUu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 148516 | 0.68 | 0.814741 |
Target: 5'- -aUCCGG-GACGGGGGugGGg-GAGGg -3' miRNA: 3'- caGGGCCaCUGCCCCUugCCgaCUUU- -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 148274 | 0.66 | 0.88952 |
Target: 5'- aUUCCGGguugGGggaGGGGAACgcuGGCUGAGg -3' miRNA: 3'- cAGGGCCa---CUg--CCCCUUG---CCGACUUu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 133761 | 0.67 | 0.846852 |
Target: 5'- -gCCCGGcGAuucCGGGGAcGCGGCgGAGu -3' miRNA: 3'- caGGGCCaCU---GCCCCU-UGCCGaCUUu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 132698 | 0.66 | 0.902114 |
Target: 5'- -gCCCGGcUGGCGGGacGCGGCa---- -3' miRNA: 3'- caGGGCC-ACUGCCCcuUGCCGacuuu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 127191 | 0.68 | 0.797739 |
Target: 5'- -aCUCGGccACGGGGuugacGCGGCUGAGc -3' miRNA: 3'- caGGGCCacUGCCCCu----UGCCGACUUu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 123730 | 0.69 | 0.743665 |
Target: 5'- aUCCCGGacgcGCGGGGAACaGCaGAAGg -3' miRNA: 3'- cAGGGCCac--UGCCCCUUGcCGaCUUU- -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 122763 | 0.67 | 0.846852 |
Target: 5'- --aCCGG-GcACGGGGAugGCGGCcGAGAg -3' miRNA: 3'- cagGGCCaC-UGCCCCU--UGCCGaCUUU- -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 118668 | 0.68 | 0.780183 |
Target: 5'- cGUCCUGGgccccaucuCGGGGcACGuGCUGAAAg -3' miRNA: 3'- -CAGGGCCacu------GCCCCuUGC-CGACUUU- -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 100372 | 0.69 | 0.73429 |
Target: 5'- --aCgGGUGACGGGGA-CGGCacgGAGg -3' miRNA: 3'- cagGgCCACUGCCCCUuGCCGa--CUUu -5' |
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14023 | 5' | -58.4 | NC_003521.1 | + | 99677 | 0.66 | 0.892107 |
Target: 5'- -gCCCGGUGcACGGGGuugccgaaggucucgGGCGGCc---- -3' miRNA: 3'- caGGGCCAC-UGCCCC---------------UUGCCGacuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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