Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14024 | 5' | -56.7 | NC_003521.1 | + | 84829 | 0.69 | 0.84223 |
Target: 5'- gCAgCUCgcgCAGCGCCUccUCGGUGGUGUa -3' miRNA: 3'- -GUgGAG---GUCGUGGAccAGCUACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 171381 | 0.69 | 0.84223 |
Target: 5'- gCGCCUCgC-GCACCUGcGacuccaccgUGGUGGUGCg -3' miRNA: 3'- -GUGGAG-GuCGUGGAC-Ca--------GCUACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 14346 | 0.69 | 0.8262 |
Target: 5'- aCACCcgcgaCCAGUACCUGGU-GcUGGUGg -3' miRNA: 3'- -GUGGa----GGUCGUGGACCAgCuACCACg -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 22984 | 0.69 | 0.8262 |
Target: 5'- gGgCUCU-GCGCCUGGUUGAcGGUGa -3' miRNA: 3'- gUgGAGGuCGUGGACCAGCUaCCACg -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 111545 | 0.69 | 0.8262 |
Target: 5'- gUACCgCCGGCGCCUcuaccUCGA-GGUGCg -3' miRNA: 3'- -GUGGaGGUCGUGGAcc---AGCUaCCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 127806 | 0.69 | 0.8262 |
Target: 5'- gCGCa-CCAGCACgUgccGGUCGAaGGUGCc -3' miRNA: 3'- -GUGgaGGUCGUGgA---CCAGCUaCCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 75136 | 0.69 | 0.82126 |
Target: 5'- gGCUUUCGGCggccgaccuggggauGCCUGGaCGcAUGGUGCc -3' miRNA: 3'- gUGGAGGUCG---------------UGGACCaGC-UACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 28358 | 0.7 | 0.80951 |
Target: 5'- gGCCaCgGGCcugGCCUGGUUGAUGGcgugGCa -3' miRNA: 3'- gUGGaGgUCG---UGGACCAGCUACCa---CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 109161 | 0.7 | 0.80951 |
Target: 5'- -uCCUCCAGCgagauguugaagGCCgccacgaugGGUCGcGUGGUGUg -3' miRNA: 3'- guGGAGGUCG------------UGGa--------CCAGC-UACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 222982 | 0.7 | 0.800935 |
Target: 5'- gCACCUCCuGCGCCcacuUGGUauggCGGUGGggGUc -3' miRNA: 3'- -GUGGAGGuCGUGG----ACCA----GCUACCa-CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 72026 | 0.7 | 0.800935 |
Target: 5'- gCGCCgcguggCCuGCACCaGGUCc-UGGUGCa -3' miRNA: 3'- -GUGGa-----GGuCGUGGaCCAGcuACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 152604 | 0.7 | 0.792217 |
Target: 5'- gGCCUCCucGGCGcCCUGGUUGGUcaccaGGcgGCg -3' miRNA: 3'- gUGGAGG--UCGU-GGACCAGCUA-----CCa-CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 34079 | 0.7 | 0.783365 |
Target: 5'- gACCUCguGCAgggaggUgUGGUCGAUGG-GCc -3' miRNA: 3'- gUGGAGguCGU------GgACCAGCUACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 193200 | 0.7 | 0.783365 |
Target: 5'- cCGCCgUCaCGGcCGCCUGGaCGAUGGcgGCc -3' miRNA: 3'- -GUGG-AG-GUC-GUGGACCaGCUACCa-CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 222259 | 0.7 | 0.783365 |
Target: 5'- gCGCuCUCCAGCugCgcgcgcgUGAUGGUGCc -3' miRNA: 3'- -GUG-GAGGUCGugGacca---GCUACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 172941 | 0.7 | 0.765286 |
Target: 5'- gCACCUCCAucuGCACCUGc-UGAcGGUGUa -3' miRNA: 3'- -GUGGAGGU---CGUGGACcaGCUaCCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 24865 | 0.71 | 0.756077 |
Target: 5'- cCACCUCUcGCAgCaGGUCcucAUGGUGCg -3' miRNA: 3'- -GUGGAGGuCGUgGaCCAGc--UACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 208996 | 0.71 | 0.746765 |
Target: 5'- cCACCUUCGGCGCCcgGGcCGAgacGGcGCu -3' miRNA: 3'- -GUGGAGGUCGUGGa-CCaGCUa--CCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 135694 | 0.71 | 0.727867 |
Target: 5'- gGCCUCUuugAGCACCUGa-CGGUGGaaUGCg -3' miRNA: 3'- gUGGAGG---UCGUGGACcaGCUACC--ACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 149317 | 0.71 | 0.718298 |
Target: 5'- cCACCUCCAuuGCCU-GUUGuUGGUGCc -3' miRNA: 3'- -GUGGAGGUcgUGGAcCAGCuACCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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