Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14024 | 5' | -56.7 | NC_003521.1 | + | 26196 | 0.67 | 0.898758 |
Target: 5'- uGCuCUUCAGCACgCUGGUCuGGcUGG-GCu -3' miRNA: 3'- gUG-GAGGUCGUG-GACCAG-CU-ACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 37632 | 0.67 | 0.898133 |
Target: 5'- gGCCUCCGGCggugaacAUCUGGU-GGUGGcauucUGCc -3' miRNA: 3'- gUGGAGGUCG-------UGGACCAgCUACC-----ACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 155562 | 0.68 | 0.89241 |
Target: 5'- gCGCCUgcgaCCGGCGCa-GGa-GGUGGUGCa -3' miRNA: 3'- -GUGGA----GGUCGUGgaCCagCUACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 156612 | 0.68 | 0.89241 |
Target: 5'- gGCCUCUcGCGCCUGGUgcugcgCGAcgcccUGG-GCu -3' miRNA: 3'- gUGGAGGuCGUGGACCA------GCU-----ACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 138704 | 0.68 | 0.89241 |
Target: 5'- aGCCUgggCGGCACgggcgCUGGcUGGUGGUGCg -3' miRNA: 3'- gUGGAg--GUCGUG-----GACCaGCUACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 168011 | 0.68 | 0.89241 |
Target: 5'- aGCCUgCuGCugCUGGU-GGUGGUagGCg -3' miRNA: 3'- gUGGAgGuCGugGACCAgCUACCA--CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 154633 | 0.68 | 0.89241 |
Target: 5'- uCGCCUCCaccguGGC-CCgcgaGUCGcUGGUGCg -3' miRNA: 3'- -GUGGAGG-----UCGuGGac--CAGCuACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 73552 | 0.68 | 0.89241 |
Target: 5'- uCACgCUCaacCACCUGGcCG-UGGUGCg -3' miRNA: 3'- -GUG-GAGgucGUGGACCaGCuACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 110835 | 0.68 | 0.885848 |
Target: 5'- cCGCCgCCGGCGCagcGGcagCGAcGGUGCa -3' miRNA: 3'- -GUGGaGGUCGUGga-CCa--GCUaCCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 11556 | 0.68 | 0.885848 |
Target: 5'- aCGCCUCCGGCGCCgucGUgCGccGGacucUGCg -3' miRNA: 3'- -GUGGAGGUCGUGGac-CA-GCuaCC----ACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 134285 | 0.68 | 0.88181 |
Target: 5'- gCugCUCCAGCAgguacucgaugggguCgUGGUUGAgcuugaUGGUGUa -3' miRNA: 3'- -GugGAGGUCGU---------------GgACCAGCU------ACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 22288 | 0.68 | 0.872099 |
Target: 5'- aCACCa-CGGCAaUUGGUCGGUGGaGCu -3' miRNA: 3'- -GUGGagGUCGUgGACCAGCUACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 166668 | 0.68 | 0.872099 |
Target: 5'- gGCCagCGGCACCUGGgcccCG-UGGcGCg -3' miRNA: 3'- gUGGagGUCGUGGACCa---GCuACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 114370 | 0.68 | 0.871391 |
Target: 5'- gGCCUCCAuGCuguacaagaucucGCCgGuGUCGcUGGUGCu -3' miRNA: 3'- gUGGAGGU-CG-------------UGGaC-CAGCuACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 86320 | 0.68 | 0.864921 |
Target: 5'- gGCCgCCAGCACCUGGaUGcUGGaggucuUGCc -3' miRNA: 3'- gUGGaGGUCGUGGACCaGCuACC------ACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 72163 | 0.68 | 0.856798 |
Target: 5'- gACCUCCGGCGCCgucGGcaugcccUCGAUGaccgugGCg -3' miRNA: 3'- gUGGAGGUCGUGGa--CC-------AGCUACca----CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 113262 | 0.69 | 0.84998 |
Target: 5'- aCGCUgaucgCCgAGCACCUGGcCGAcgGcGUGCu -3' miRNA: 3'- -GUGGa----GG-UCGUGGACCaGCUa-C-CACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 121751 | 0.69 | 0.84998 |
Target: 5'- aCACCUCUuGCccgaCUGGUggaUGAUGGUGUc -3' miRNA: 3'- -GUGGAGGuCGug--GACCA---GCUACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 76401 | 0.69 | 0.84998 |
Target: 5'- gCGCUgCUAGCACCagcggcGGUgUGGUGGUGCu -3' miRNA: 3'- -GUGGaGGUCGUGGa-----CCA-GCUACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 93151 | 0.69 | 0.848445 |
Target: 5'- cCACCUCCGGCcgucgcucgacgucCCUcuaccggggcucgacGGUCGGaGGUGCc -3' miRNA: 3'- -GUGGAGGUCGu-------------GGA---------------CCAGCUaCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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