miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 164669 0.66 0.937025
Target:  5'- aCACCUguaCCuGCGCCgugugcGcGUCGAggaccUGGUGCu -3'
miRNA:   3'- -GUGGA---GGuCGUGGa-----C-CAGCU-----ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 113005 0.66 0.937025
Target:  5'- cCACC-CgGGCACCU--UCGAccggcacgugcUGGUGCg -3'
miRNA:   3'- -GUGGaGgUCGUGGAccAGCU-----------ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 53507 0.66 0.937025
Target:  5'- gCugCUgCGGCGUCgcagcGGcCGAUGGUGCu -3'
miRNA:   3'- -GugGAgGUCGUGGa----CCaGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 196867 0.66 0.932227
Target:  5'- cCACCUCCAGCAac-GGcacCGcgGGUGa -3'
miRNA:   3'- -GUGGAGGUCGUggaCCa--GCuaCCACg -5'
14024 5' -56.7 NC_003521.1 + 15950 0.66 0.932227
Target:  5'- gCGCCa--AGCACCUGGaCGAcUGGcGCg -3'
miRNA:   3'- -GUGGaggUCGUGGACCaGCU-ACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 85444 0.67 0.927206
Target:  5'- gGCCUCgucguccGCGCCggcgagaaaggUGGUCGucGUGGUGCc -3'
miRNA:   3'- gUGGAGgu-----CGUGG-----------ACCAGC--UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 52107 0.67 0.925656
Target:  5'- cCAUUUCCAGCucugauccagauacGCCgUGGUgGGagGGUGCa -3'
miRNA:   3'- -GUGGAGGUCG--------------UGG-ACCAgCUa-CCACG- -5'
14024 5' -56.7 NC_003521.1 + 137282 0.67 0.921961
Target:  5'- gGCC-CCAGCgACCUGGagcugCgGGUGGcGCg -3'
miRNA:   3'- gUGGaGGUCG-UGGACCa----G-CUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 113055 0.67 0.921961
Target:  5'- gCGCCgugcUCCAGCACCUuccgggcuacgaGG-CGcagacggccgccGUGGUGCa -3'
miRNA:   3'- -GUGG----AGGUCGUGGA------------CCaGC------------UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 36685 0.67 0.921961
Target:  5'- gGCUUUCuGCACacgcagCUGGU-GAUGGUGCc -3'
miRNA:   3'- gUGGAGGuCGUG------GACCAgCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 184123 0.67 0.921961
Target:  5'- aCGCgaCCAGCgucauccgcuGCCUGGgcggcuacugCGAccUGGUGCg -3'
miRNA:   3'- -GUGgaGGUCG----------UGGACCa---------GCU--ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 152779 0.67 0.920885
Target:  5'- uCGCCUCCuGCGCCUugcgcaccgccucGGUCaccggcaGGUGGUacaGCu -3'
miRNA:   3'- -GUGGAGGuCGUGGA-------------CCAG-------CUACCA---CG- -5'
14024 5' -56.7 NC_003521.1 + 113114 0.67 0.916493
Target:  5'- cUACC-CCgAGCucuucuACCUGGUgGAcgugcUGGUGCa -3'
miRNA:   3'- -GUGGaGG-UCG------UGGACCAgCU-----ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 31112 0.67 0.916493
Target:  5'- gACCUCCucggaccuggAGCGCCUGuUCG-UGGaGCa -3'
miRNA:   3'- gUGGAGG----------UCGUGGACcAGCuACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 144102 0.67 0.913105
Target:  5'- uGCCUCaugCGGCugcuggaccgccgcgGCCUGGaCGA-GGUGCg -3'
miRNA:   3'- gUGGAG---GUCG---------------UGGACCaGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 111280 0.67 0.910802
Target:  5'- cCGCCgugCCAGCGCCgccgCGAUGGa-- -3'
miRNA:   3'- -GUGGa--GGUCGUGGaccaGCUACCacg -5'
14024 5' -56.7 NC_003521.1 + 6698 0.67 0.910802
Target:  5'- gCGCCcgCgAGCGCUgcugGGUCucgccGUGGUGCa -3'
miRNA:   3'- -GUGGa-GgUCGUGGa---CCAGc----UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 152959 0.67 0.909051
Target:  5'- gGCCUggCCAGCGCCUGcgaggacaccuacaaCGAUGG-GCg -3'
miRNA:   3'- gUGGA--GGUCGUGGACca-------------GCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 15508 0.67 0.904889
Target:  5'- -uUCUCCGGCGCUcgGGUUGgcGGcgGCa -3'
miRNA:   3'- guGGAGGUCGUGGa-CCAGCuaCCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 123685 0.67 0.904889
Target:  5'- cCAUCUgcgCCAGCugCUGGUCGAUcaucgaGCg -3'
miRNA:   3'- -GUGGA---GGUCGugGACCAGCUAcca---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.