miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 193200 0.7 0.783365
Target:  5'- cCGCCgUCaCGGcCGCCUGGaCGAUGGcgGCc -3'
miRNA:   3'- -GUGG-AG-GUC-GUGGACCaGCUACCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 34079 0.7 0.783365
Target:  5'- gACCUCguGCAgggaggUgUGGUCGAUGG-GCc -3'
miRNA:   3'- gUGGAGguCGU------GgACCAGCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 222259 0.7 0.783365
Target:  5'- gCGCuCUCCAGCugCgcgcgcgUGAUGGUGCc -3'
miRNA:   3'- -GUG-GAGGUCGugGacca---GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 152604 0.7 0.792217
Target:  5'- gGCCUCCucGGCGcCCUGGUUGGUcaccaGGcgGCg -3'
miRNA:   3'- gUGGAGG--UCGU-GGACCAGCUA-----CCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 222982 0.7 0.800935
Target:  5'- gCACCUCCuGCGCCcacuUGGUauggCGGUGGggGUc -3'
miRNA:   3'- -GUGGAGGuCGUGG----ACCA----GCUACCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 72026 0.7 0.800935
Target:  5'- gCGCCgcguggCCuGCACCaGGUCc-UGGUGCa -3'
miRNA:   3'- -GUGGa-----GGuCGUGGaCCAGcuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 28358 0.7 0.80951
Target:  5'- gGCCaCgGGCcugGCCUGGUUGAUGGcgugGCa -3'
miRNA:   3'- gUGGaGgUCG---UGGACCAGCUACCa---CG- -5'
14024 5' -56.7 NC_003521.1 + 109161 0.7 0.80951
Target:  5'- -uCCUCCAGCgagauguugaagGCCgccacgaugGGUCGcGUGGUGUg -3'
miRNA:   3'- guGGAGGUCG------------UGGa--------CCAGC-UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 75136 0.69 0.82126
Target:  5'- gGCUUUCGGCggccgaccuggggauGCCUGGaCGcAUGGUGCc -3'
miRNA:   3'- gUGGAGGUCG---------------UGGACCaGC-UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 127806 0.69 0.8262
Target:  5'- gCGCa-CCAGCACgUgccGGUCGAaGGUGCc -3'
miRNA:   3'- -GUGgaGGUCGUGgA---CCAGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 14346 0.69 0.8262
Target:  5'- aCACCcgcgaCCAGUACCUGGU-GcUGGUGg -3'
miRNA:   3'- -GUGGa----GGUCGUGGACCAgCuACCACg -5'
14024 5' -56.7 NC_003521.1 + 22984 0.69 0.8262
Target:  5'- gGgCUCU-GCGCCUGGUUGAcGGUGa -3'
miRNA:   3'- gUgGAGGuCGUGGACCAGCUaCCACg -5'
14024 5' -56.7 NC_003521.1 + 111545 0.69 0.8262
Target:  5'- gUACCgCCGGCGCCUcuaccUCGA-GGUGCg -3'
miRNA:   3'- -GUGGaGGUCGUGGAcc---AGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 84829 0.69 0.84223
Target:  5'- gCAgCUCgcgCAGCGCCUccUCGGUGGUGUa -3'
miRNA:   3'- -GUgGAG---GUCGUGGAccAGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 171381 0.69 0.84223
Target:  5'- gCGCCUCgC-GCACCUGcGacuccaccgUGGUGGUGCg -3'
miRNA:   3'- -GUGGAG-GuCGUGGAC-Ca--------GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 93151 0.69 0.848445
Target:  5'- cCACCUCCGGCcgucgcucgacgucCCUcuaccggggcucgacGGUCGGaGGUGCc -3'
miRNA:   3'- -GUGGAGGUCGu-------------GGA---------------CCAGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 113262 0.69 0.84998
Target:  5'- aCGCUgaucgCCgAGCACCUGGcCGAcgGcGUGCu -3'
miRNA:   3'- -GUGGa----GG-UCGUGGACCaGCUa-C-CACG- -5'
14024 5' -56.7 NC_003521.1 + 76401 0.69 0.84998
Target:  5'- gCGCUgCUAGCACCagcggcGGUgUGGUGGUGCu -3'
miRNA:   3'- -GUGGaGGUCGUGGa-----CCA-GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 121751 0.69 0.84998
Target:  5'- aCACCUCUuGCccgaCUGGUggaUGAUGGUGUc -3'
miRNA:   3'- -GUGGAGGuCGug--GACCA---GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 72163 0.68 0.856798
Target:  5'- gACCUCCGGCGCCgucGGcaugcccUCGAUGaccgugGCg -3'
miRNA:   3'- gUGGAGGUCGUGGa--CC-------AGCUACca----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.