miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 176787 1.12 0.002664
Target:  5'- gCACCUCCAGCACCUGGUCGAUGGUGCg -3'
miRNA:   3'- -GUGGAGGUCGUGGACCAGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 172542 0.8 0.274657
Target:  5'- -uCCUCCAGCACCUGGUgGAUGcUGg -3'
miRNA:   3'- guGGAGGUCGUGGACCAgCUACcACg -5'
14024 5' -56.7 NC_003521.1 + 225121 0.8 0.280982
Target:  5'- uGCCgagcgaCAGCACCUGGUCGAcgUGGUuGCg -3'
miRNA:   3'- gUGGag----GUCGUGGACCAGCU--ACCA-CG- -5'
14024 5' -56.7 NC_003521.1 + 119793 0.79 0.314347
Target:  5'- cCACCuUCCGGCGCCagcgGGgcgacaCGGUGGUGCg -3'
miRNA:   3'- -GUGG-AGGUCGUGGa---CCa-----GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 226471 0.78 0.373774
Target:  5'- gGCCaCCAGCACCagguacUGGUCGcgGGUGUc -3'
miRNA:   3'- gUGGaGGUCGUGG------ACCAGCuaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 182354 0.75 0.532217
Target:  5'- gGCCaUUGGCAgacCCUGGUCGAcgUGGUGCg -3'
miRNA:   3'- gUGGaGGUCGU---GGACCAGCU--ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 36696 0.73 0.610258
Target:  5'- gGgCUCCGGCGCCUGGccCGAgcaGGUGg -3'
miRNA:   3'- gUgGAGGUCGUGGACCa-GCUa--CCACg -5'
14024 5' -56.7 NC_003521.1 + 126815 0.73 0.639947
Target:  5'- gCACCUCCAGCACCU--UCGc--GUGCu -3'
miRNA:   3'- -GUGGAGGUCGUGGAccAGCuacCACG- -5'
14024 5' -56.7 NC_003521.1 + 143042 0.72 0.659722
Target:  5'- gCACCUUCcGCgACCUGGaUGGUGGUGg -3'
miRNA:   3'- -GUGGAGGuCG-UGGACCaGCUACCACg -5'
14024 5' -56.7 NC_003521.1 + 194268 0.72 0.679415
Target:  5'- cCACCgcUUCAGCACCcGGcgCGAggcccUGGUGCg -3'
miRNA:   3'- -GUGG--AGGUCGUGGaCCa-GCU-----ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 92059 0.72 0.679415
Target:  5'- uGCCUCCcguagcgauGGCggACCgggGGUCGGggGGUGCg -3'
miRNA:   3'- gUGGAGG---------UCG--UGGa--CCAGCUa-CCACG- -5'
14024 5' -56.7 NC_003521.1 + 85261 0.72 0.68921
Target:  5'- cCACCUCCuGCGCC-GGUCGcaGGcGCu -3'
miRNA:   3'- -GUGGAGGuCGUGGaCCAGCuaCCaCG- -5'
14024 5' -56.7 NC_003521.1 + 16405 0.72 0.698961
Target:  5'- cCACCaCgCAGCGCCUGGccggCGA-GGUGUa -3'
miRNA:   3'- -GUGGaG-GUCGUGGACCa---GCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 173970 0.72 0.698961
Target:  5'- aCACgUCCAGCACCUGGaUGAacaGGUcgucGCg -3'
miRNA:   3'- -GUGgAGGUCGUGGACCaGCUa--CCA----CG- -5'
14024 5' -56.7 NC_003521.1 + 56929 0.71 0.70866
Target:  5'- cCGCCUCCAGCACCUcGGccUCG-UGccGCa -3'
miRNA:   3'- -GUGGAGGUCGUGGA-CC--AGCuACcaCG- -5'
14024 5' -56.7 NC_003521.1 + 149317 0.71 0.718298
Target:  5'- cCACCUCCAuuGCCU-GUUGuUGGUGCc -3'
miRNA:   3'- -GUGGAGGUcgUGGAcCAGCuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 135694 0.71 0.727867
Target:  5'- gGCCUCUuugAGCACCUGa-CGGUGGaaUGCg -3'
miRNA:   3'- gUGGAGG---UCGUGGACcaGCUACC--ACG- -5'
14024 5' -56.7 NC_003521.1 + 208996 0.71 0.746765
Target:  5'- cCACCUUCGGCGCCcgGGcCGAgacGGcGCu -3'
miRNA:   3'- -GUGGAGGUCGUGGa-CCaGCUa--CCaCG- -5'
14024 5' -56.7 NC_003521.1 + 24865 0.71 0.756077
Target:  5'- cCACCUCUcGCAgCaGGUCcucAUGGUGCg -3'
miRNA:   3'- -GUGGAGGuCGUgGaCCAGc--UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 172941 0.7 0.765286
Target:  5'- gCACCUCCAucuGCACCUGc-UGAcGGUGUa -3'
miRNA:   3'- -GUGGAGGU---CGUGGACcaGCUaCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.