miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 121751 0.69 0.84998
Target:  5'- aCACCUCUuGCccgaCUGGUggaUGAUGGUGUc -3'
miRNA:   3'- -GUGGAGGuCGug--GACCA---GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 222259 0.7 0.783365
Target:  5'- gCGCuCUCCAGCugCgcgcgcgUGAUGGUGCc -3'
miRNA:   3'- -GUG-GAGGUCGugGacca---GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 152604 0.7 0.792217
Target:  5'- gGCCUCCucGGCGcCCUGGUUGGUcaccaGGcgGCg -3'
miRNA:   3'- gUGGAGG--UCGU-GGACCAGCUA-----CCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 222982 0.7 0.800935
Target:  5'- gCACCUCCuGCGCCcacuUGGUauggCGGUGGggGUc -3'
miRNA:   3'- -GUGGAGGuCGUGG----ACCA----GCUACCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 72026 0.7 0.800935
Target:  5'- gCGCCgcguggCCuGCACCaGGUCc-UGGUGCa -3'
miRNA:   3'- -GUGGa-----GGuCGUGGaCCAGcuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 109161 0.7 0.80951
Target:  5'- -uCCUCCAGCgagauguugaagGCCgccacgaugGGUCGcGUGGUGUg -3'
miRNA:   3'- guGGAGGUCG------------UGGa--------CCAGC-UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 22984 0.69 0.8262
Target:  5'- gGgCUCU-GCGCCUGGUUGAcGGUGa -3'
miRNA:   3'- gUgGAGGuCGUGGACCAGCUaCCACg -5'
14024 5' -56.7 NC_003521.1 + 111545 0.69 0.8262
Target:  5'- gUACCgCCGGCGCCUcuaccUCGA-GGUGCg -3'
miRNA:   3'- -GUGGaGGUCGUGGAcc---AGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 93151 0.69 0.848445
Target:  5'- cCACCUCCGGCcgucgcucgacgucCCUcuaccggggcucgacGGUCGGaGGUGCc -3'
miRNA:   3'- -GUGGAGGUCGu-------------GGA---------------CCAGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 193200 0.7 0.783365
Target:  5'- cCGCCgUCaCGGcCGCCUGGaCGAUGGcgGCc -3'
miRNA:   3'- -GUGG-AG-GUC-GUGGACCaGCUACCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 34079 0.7 0.783365
Target:  5'- gACCUCguGCAgggaggUgUGGUCGAUGG-GCc -3'
miRNA:   3'- gUGGAGguCGU------GgACCAGCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 172941 0.7 0.765286
Target:  5'- gCACCUCCAucuGCACCUGc-UGAcGGUGUa -3'
miRNA:   3'- -GUGGAGGU---CGUGGACcaGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 225121 0.8 0.280982
Target:  5'- uGCCgagcgaCAGCACCUGGUCGAcgUGGUuGCg -3'
miRNA:   3'- gUGGag----GUCGUGGACCAGCU--ACCA-CG- -5'
14024 5' -56.7 NC_003521.1 + 119793 0.79 0.314347
Target:  5'- cCACCuUCCGGCGCCagcgGGgcgacaCGGUGGUGCg -3'
miRNA:   3'- -GUGG-AGGUCGUGGa---CCa-----GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 226471 0.78 0.373774
Target:  5'- gGCCaCCAGCACCagguacUGGUCGcgGGUGUc -3'
miRNA:   3'- gUGGaGGUCGUGG------ACCAGCuaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 126815 0.73 0.639947
Target:  5'- gCACCUCCAGCACCU--UCGc--GUGCu -3'
miRNA:   3'- -GUGGAGGUCGUGGAccAGCuacCACG- -5'
14024 5' -56.7 NC_003521.1 + 143042 0.72 0.659722
Target:  5'- gCACCUUCcGCgACCUGGaUGGUGGUGg -3'
miRNA:   3'- -GUGGAGGuCG-UGGACCaGCUACCACg -5'
14024 5' -56.7 NC_003521.1 + 92059 0.72 0.679415
Target:  5'- uGCCUCCcguagcgauGGCggACCgggGGUCGGggGGUGCg -3'
miRNA:   3'- gUGGAGG---------UCG--UGGa--CCAGCUa-CCACG- -5'
14024 5' -56.7 NC_003521.1 + 56929 0.71 0.70866
Target:  5'- cCGCCUCCAGCACCUcGGccUCG-UGccGCa -3'
miRNA:   3'- -GUGGAGGUCGUGGA-CC--AGCuACcaCG- -5'
14024 5' -56.7 NC_003521.1 + 135694 0.71 0.727867
Target:  5'- gGCCUCUuugAGCACCUGa-CGGUGGaaUGCg -3'
miRNA:   3'- gUGGAGG---UCGUGGACcaGCUACC--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.