miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 6698 0.67 0.910802
Target:  5'- gCGCCcgCgAGCGCUgcugGGUCucgccGUGGUGCa -3'
miRNA:   3'- -GUGGa-GgUCGUGGa---CCAGc----UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 11556 0.68 0.885848
Target:  5'- aCGCCUCCGGCGCCgucGUgCGccGGacucUGCg -3'
miRNA:   3'- -GUGGAGGUCGUGGac-CA-GCuaCC----ACG- -5'
14024 5' -56.7 NC_003521.1 + 14346 0.69 0.8262
Target:  5'- aCACCcgcgaCCAGUACCUGGU-GcUGGUGg -3'
miRNA:   3'- -GUGGa----GGUCGUGGACCAgCuACCACg -5'
14024 5' -56.7 NC_003521.1 + 15508 0.67 0.904889
Target:  5'- -uUCUCCGGCGCUcgGGUUGgcGGcgGCa -3'
miRNA:   3'- guGGAGGUCGUGGa-CCAGCuaCCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 15950 0.66 0.932227
Target:  5'- gCGCCa--AGCACCUGGaCGAcUGGcGCg -3'
miRNA:   3'- -GUGGaggUCGUGGACCaGCU-ACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 16405 0.72 0.698961
Target:  5'- cCACCaCgCAGCGCCUGGccggCGA-GGUGUa -3'
miRNA:   3'- -GUGGaG-GUCGUGGACCa---GCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 22288 0.68 0.872099
Target:  5'- aCACCa-CGGCAaUUGGUCGGUGGaGCu -3'
miRNA:   3'- -GUGGagGUCGUgGACCAGCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 22984 0.69 0.8262
Target:  5'- gGgCUCU-GCGCCUGGUUGAcGGUGa -3'
miRNA:   3'- gUgGAGGuCGUGGACCAGCUaCCACg -5'
14024 5' -56.7 NC_003521.1 + 24865 0.71 0.756077
Target:  5'- cCACCUCUcGCAgCaGGUCcucAUGGUGCg -3'
miRNA:   3'- -GUGGAGGuCGUgGaCCAGc--UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 26196 0.67 0.898758
Target:  5'- uGCuCUUCAGCACgCUGGUCuGGcUGG-GCu -3'
miRNA:   3'- gUG-GAGGUCGUG-GACCAG-CU-ACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 28358 0.7 0.80951
Target:  5'- gGCCaCgGGCcugGCCUGGUUGAUGGcgugGCa -3'
miRNA:   3'- gUGGaGgUCG---UGGACCAGCUACCa---CG- -5'
14024 5' -56.7 NC_003521.1 + 28500 0.66 0.9416
Target:  5'- aGCCUgCAGCACgUGG-CGAguaucaacgccUGcGUGCc -3'
miRNA:   3'- gUGGAgGUCGUGgACCaGCU-----------AC-CACG- -5'
14024 5' -56.7 NC_003521.1 + 28810 0.66 0.945954
Target:  5'- uCACCgacggCCAGUACCUGG-CGugucUGCg -3'
miRNA:   3'- -GUGGa----GGUCGUGGACCaGCuaccACG- -5'
14024 5' -56.7 NC_003521.1 + 31112 0.67 0.916493
Target:  5'- gACCUCCucggaccuggAGCGCCUGuUCG-UGGaGCa -3'
miRNA:   3'- gUGGAGG----------UCGUGGACcAGCuACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 34079 0.7 0.783365
Target:  5'- gACCUCguGCAgggaggUgUGGUCGAUGG-GCc -3'
miRNA:   3'- gUGGAGguCGU------GgACCAGCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 36685 0.67 0.921961
Target:  5'- gGCUUUCuGCACacgcagCUGGU-GAUGGUGCc -3'
miRNA:   3'- gUGGAGGuCGUG------GACCAgCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 36696 0.73 0.610258
Target:  5'- gGgCUCCGGCGCCUGGccCGAgcaGGUGg -3'
miRNA:   3'- gUgGAGGUCGUGGACCa-GCUa--CCACg -5'
14024 5' -56.7 NC_003521.1 + 37632 0.67 0.898133
Target:  5'- gGCCUCCGGCggugaacAUCUGGU-GGUGGcauucUGCc -3'
miRNA:   3'- gUGGAGGUCG-------UGGACCAgCUACC-----ACG- -5'
14024 5' -56.7 NC_003521.1 + 39847 0.66 0.945954
Target:  5'- gGCCUCCGgcguggggcuuGCACgUGGUgGGguuGUGCa -3'
miRNA:   3'- gUGGAGGU-----------CGUGgACCAgCUac-CACG- -5'
14024 5' -56.7 NC_003521.1 + 40251 0.66 0.945529
Target:  5'- cCGCCUCCGGCagcucacGCUUGGUUGGccGUuuGCa -3'
miRNA:   3'- -GUGGAGGUCG-------UGGACCAGCUacCA--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.