miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 240479 0.66 0.945529
Target:  5'- cCGCCUCCGGCagcucacGCUUGGUUGGccGUuuGCa -3'
miRNA:   3'- -GUGGAGGUCG-------UGGACCAGCUacCA--CG- -5'
14024 5' -56.7 NC_003521.1 + 240074 0.66 0.945954
Target:  5'- gGCCUCCGgcguggggcuuGCACgUGGUgGGguuGUGCa -3'
miRNA:   3'- gUGGAGGU-----------CGUGgACCAgCUac-CACG- -5'
14024 5' -56.7 NC_003521.1 + 233022 0.66 0.945954
Target:  5'- aCGCCgUCCAGCuGCCgcuUCGAgcgcUGGUGUa -3'
miRNA:   3'- -GUGG-AGGUCG-UGGaccAGCU----ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 226471 0.78 0.373774
Target:  5'- gGCCaCCAGCACCagguacUGGUCGcgGGUGUc -3'
miRNA:   3'- gUGGaGGUCGUGG------ACCAGCuaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 225121 0.8 0.280982
Target:  5'- uGCCgagcgaCAGCACCUGGUCGAcgUGGUuGCg -3'
miRNA:   3'- gUGGag----GUCGUGGACCAGCU--ACCA-CG- -5'
14024 5' -56.7 NC_003521.1 + 222982 0.7 0.800935
Target:  5'- gCACCUCCuGCGCCcacuUGGUauggCGGUGGggGUc -3'
miRNA:   3'- -GUGGAGGuCGUGG----ACCA----GCUACCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 222259 0.7 0.783365
Target:  5'- gCGCuCUCCAGCugCgcgcgcgUGAUGGUGCc -3'
miRNA:   3'- -GUG-GAGGUCGugGacca---GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 208996 0.71 0.746765
Target:  5'- cCACCUUCGGCGCCcgGGcCGAgacGGcGCu -3'
miRNA:   3'- -GUGGAGGUCGUGGa-CCaGCUa--CCaCG- -5'
14024 5' -56.7 NC_003521.1 + 196867 0.66 0.932227
Target:  5'- cCACCUCCAGCAac-GGcacCGcgGGUGa -3'
miRNA:   3'- -GUGGAGGUCGUggaCCa--GCuaCCACg -5'
14024 5' -56.7 NC_003521.1 + 194268 0.72 0.679415
Target:  5'- cCACCgcUUCAGCACCcGGcgCGAggcccUGGUGCg -3'
miRNA:   3'- -GUGG--AGGUCGUGGaCCa-GCU-----ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 193200 0.7 0.783365
Target:  5'- cCGCCgUCaCGGcCGCCUGGaCGAUGGcgGCc -3'
miRNA:   3'- -GUGG-AG-GUC-GUGGACCaGCUACCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 188059 0.66 0.938882
Target:  5'- aCAUCUCCAuccugguuaacgaguGCgGCCUGGUCuucGGUGUa -3'
miRNA:   3'- -GUGGAGGU---------------CG-UGGACCAGcuaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 184123 0.67 0.921961
Target:  5'- aCGCgaCCAGCgucauccgcuGCCUGGgcggcuacugCGAccUGGUGCg -3'
miRNA:   3'- -GUGgaGGUCG----------UGGACCa---------GCU--ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 182354 0.75 0.532217
Target:  5'- gGCCaUUGGCAgacCCUGGUCGAcgUGGUGCg -3'
miRNA:   3'- gUGGaGGUCGU---GGACCAGCU--ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 176787 1.12 0.002664
Target:  5'- gCACCUCCAGCACCUGGUCGAUGGUGCg -3'
miRNA:   3'- -GUGGAGGUCGUGGACCAGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 173970 0.72 0.698961
Target:  5'- aCACgUCCAGCACCUGGaUGAacaGGUcgucGCg -3'
miRNA:   3'- -GUGgAGGUCGUGGACCaGCUa--CCA----CG- -5'
14024 5' -56.7 NC_003521.1 + 172941 0.7 0.765286
Target:  5'- gCACCUCCAucuGCACCUGc-UGAcGGUGUa -3'
miRNA:   3'- -GUGGAGGU---CGUGGACcaGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 172542 0.8 0.274657
Target:  5'- -uCCUCCAGCACCUGGUgGAUGcUGg -3'
miRNA:   3'- guGGAGGUCGUGGACCAgCUACcACg -5'
14024 5' -56.7 NC_003521.1 + 171381 0.69 0.84223
Target:  5'- gCGCCUCgC-GCACCUGcGacuccaccgUGGUGGUGCg -3'
miRNA:   3'- -GUGGAG-GuCGUGGAC-Ca--------GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 168011 0.68 0.89241
Target:  5'- aGCCUgCuGCugCUGGU-GGUGGUagGCg -3'
miRNA:   3'- gUGGAgGuCGugGACCAgCUACCA--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.