miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 52107 0.67 0.925656
Target:  5'- cCAUUUCCAGCucugauccagauacGCCgUGGUgGGagGGUGCa -3'
miRNA:   3'- -GUGGAGGUCG--------------UGG-ACCAgCUa-CCACG- -5'
14024 5' -56.7 NC_003521.1 + 53507 0.66 0.937025
Target:  5'- gCugCUgCGGCGUCgcagcGGcCGAUGGUGCu -3'
miRNA:   3'- -GugGAgGUCGUGGa----CCaGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 56929 0.71 0.70866
Target:  5'- cCGCCUCCAGCACCUcGGccUCG-UGccGCa -3'
miRNA:   3'- -GUGGAGGUCGUGGA-CC--AGCuACcaCG- -5'
14024 5' -56.7 NC_003521.1 + 63483 0.66 0.9416
Target:  5'- cCAUCUCCAGCGuCCUGGaCcg-GGcGCu -3'
miRNA:   3'- -GUGGAGGUCGU-GGACCaGcuaCCaCG- -5'
14024 5' -56.7 NC_003521.1 + 72026 0.7 0.800935
Target:  5'- gCGCCgcguggCCuGCACCaGGUCc-UGGUGCa -3'
miRNA:   3'- -GUGGa-----GGuCGUGGaCCAGcuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 72163 0.68 0.856798
Target:  5'- gACCUCCGGCGCCgucGGcaugcccUCGAUGaccgugGCg -3'
miRNA:   3'- gUGGAGGUCGUGGa--CC-------AGCUACca----CG- -5'
14024 5' -56.7 NC_003521.1 + 73552 0.68 0.89241
Target:  5'- uCACgCUCaacCACCUGGcCG-UGGUGCg -3'
miRNA:   3'- -GUG-GAGgucGUGGACCaGCuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 74040 0.66 0.943368
Target:  5'- uCACCUCCuacUGCCagaacaacgucaagaUGGUCGAccgcauccagcUGGUGCu -3'
miRNA:   3'- -GUGGAGGuc-GUGG---------------ACCAGCU-----------ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 74459 0.66 0.941153
Target:  5'- gCACCgugUUCAGCGagcacguCCUGGgcuUCGAgcUGGUGCc -3'
miRNA:   3'- -GUGG---AGGUCGU-------GGACC---AGCU--ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 75136 0.69 0.82126
Target:  5'- gGCUUUCGGCggccgaccuggggauGCCUGGaCGcAUGGUGCc -3'
miRNA:   3'- gUGGAGGUCG---------------UGGACCaGC-UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 75878 0.66 0.940251
Target:  5'- gGCCUUgAGCACCUGaUCGAaguacuugucggcgUGGauggGCa -3'
miRNA:   3'- gUGGAGgUCGUGGACcAGCU--------------ACCa---CG- -5'
14024 5' -56.7 NC_003521.1 + 76401 0.69 0.84998
Target:  5'- gCGCUgCUAGCACCagcggcGGUgUGGUGGUGCu -3'
miRNA:   3'- -GUGGaGGUCGUGGa-----CCA-GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 84829 0.69 0.84223
Target:  5'- gCAgCUCgcgCAGCGCCUccUCGGUGGUGUa -3'
miRNA:   3'- -GUgGAG---GUCGUGGAccAGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 85261 0.72 0.68921
Target:  5'- cCACCUCCuGCGCC-GGUCGcaGGcGCu -3'
miRNA:   3'- -GUGGAGGuCGUGGaCCAGCuaCCaCG- -5'
14024 5' -56.7 NC_003521.1 + 85444 0.67 0.927206
Target:  5'- gGCCUCgucguccGCGCCggcgagaaaggUGGUCGucGUGGUGCc -3'
miRNA:   3'- gUGGAGgu-----CGUGG-----------ACCAGC--UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 86320 0.68 0.864921
Target:  5'- gGCCgCCAGCACCUGGaUGcUGGaggucuUGCc -3'
miRNA:   3'- gUGGaGGUCGUGGACCaGCuACC------ACG- -5'
14024 5' -56.7 NC_003521.1 + 88640 0.66 0.947634
Target:  5'- uCACagcCCAGCgaggcgcagagggccGCCaGGUCGGUGGgccgGCg -3'
miRNA:   3'- -GUGga-GGUCG---------------UGGaCCAGCUACCa---CG- -5'
14024 5' -56.7 NC_003521.1 + 92059 0.72 0.679415
Target:  5'- uGCCUCCcguagcgauGGCggACCgggGGUCGGggGGUGCg -3'
miRNA:   3'- gUGGAGG---------UCG--UGGa--CCAGCUa-CCACG- -5'
14024 5' -56.7 NC_003521.1 + 93151 0.69 0.848445
Target:  5'- cCACCUCCGGCcgucgcucgacgucCCUcuaccggggcucgacGGUCGGaGGUGCc -3'
miRNA:   3'- -GUGGAGGUCGu-------------GGA---------------CCAGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 99800 0.66 0.945954
Target:  5'- uGCC-CCAGCccuCCuggUGGUCGA-GGaUGCa -3'
miRNA:   3'- gUGGaGGUCGu--GG---ACCAGCUaCC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.