Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14024 | 5' | -56.7 | NC_003521.1 | + | 99800 | 0.66 | 0.945954 |
Target: 5'- uGCC-CCAGCccuCCuggUGGUCGA-GGaUGCa -3' miRNA: 3'- gUGGaGGUCGu--GG---ACCAGCUaCC-ACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 28810 | 0.66 | 0.945954 |
Target: 5'- uCACCgacggCCAGUACCUGG-CGugucUGCg -3' miRNA: 3'- -GUGGa----GGUCGUGGACCaGCuaccACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 240479 | 0.66 | 0.945529 |
Target: 5'- cCGCCUCCGGCagcucacGCUUGGUUGGccGUuuGCa -3' miRNA: 3'- -GUGGAGGUCG-------UGGACCAGCUacCA--CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 74040 | 0.66 | 0.943368 |
Target: 5'- uCACCUCCuacUGCCagaacaacgucaagaUGGUCGAccgcauccagcUGGUGCu -3' miRNA: 3'- -GUGGAGGuc-GUGG---------------ACCAGCU-----------ACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 122679 | 0.66 | 0.942045 |
Target: 5'- gGCgC-CCAGCACCgacagcugcggggccGGUCGGUuGUGCa -3' miRNA: 3'- gUG-GaGGUCGUGGa--------------CCAGCUAcCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 85444 | 0.67 | 0.927206 |
Target: 5'- gGCCUCgucguccGCGCCggcgagaaaggUGGUCGucGUGGUGCc -3' miRNA: 3'- gUGGAGgu-----CGUGG-----------ACCAGC--UACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 52107 | 0.67 | 0.925656 |
Target: 5'- cCAUUUCCAGCucugauccagauacGCCgUGGUgGGagGGUGCa -3' miRNA: 3'- -GUGGAGGUCG--------------UGG-ACCAgCUa-CCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 137282 | 0.67 | 0.921961 |
Target: 5'- gGCC-CCAGCgACCUGGagcugCgGGUGGcGCg -3' miRNA: 3'- gUGGaGGUCG-UGGACCa----G-CUACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 152959 | 0.67 | 0.909051 |
Target: 5'- gGCCUggCCAGCGCCUGcgaggacaccuacaaCGAUGG-GCg -3' miRNA: 3'- gUGGA--GGUCGUGGACca-------------GCUACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 152779 | 0.67 | 0.920885 |
Target: 5'- uCGCCUCCuGCGCCUugcgcaccgccucGGUCaccggcaGGUGGUacaGCu -3' miRNA: 3'- -GUGGAGGuCGUGGA-------------CCAG-------CUACCA---CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 144102 | 0.67 | 0.913105 |
Target: 5'- uGCCUCaugCGGCugcuggaccgccgcgGCCUGGaCGA-GGUGCg -3' miRNA: 3'- gUGGAG---GUCG---------------UGGACCaGCUaCCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 37632 | 0.67 | 0.898133 |
Target: 5'- gGCCUCCGGCggugaacAUCUGGU-GGUGGcauucUGCc -3' miRNA: 3'- gUGGAGGUCG-------UGGACCAgCUACC-----ACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 6698 | 0.67 | 0.910802 |
Target: 5'- gCGCCcgCgAGCGCUgcugGGUCucgccGUGGUGCa -3' miRNA: 3'- -GUGGa-GgUCGUGGa---CCAGc----UACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 31112 | 0.67 | 0.916493 |
Target: 5'- gACCUCCucggaccuggAGCGCCUGuUCG-UGGaGCa -3' miRNA: 3'- gUGGAGG----------UCGUGGACcAGCuACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 184123 | 0.67 | 0.921961 |
Target: 5'- aCGCgaCCAGCgucauccgcuGCCUGGgcggcuacugCGAccUGGUGCg -3' miRNA: 3'- -GUGgaGGUCG----------UGGACCa---------GCU--ACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 15508 | 0.67 | 0.904889 |
Target: 5'- -uUCUCCGGCGCUcgGGUUGgcGGcgGCa -3' miRNA: 3'- guGGAGGUCGUGGa-CCAGCuaCCa-CG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 26196 | 0.67 | 0.898758 |
Target: 5'- uGCuCUUCAGCACgCUGGUCuGGcUGG-GCu -3' miRNA: 3'- gUG-GAGGUCGUG-GACCAG-CU-ACCaCG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 113114 | 0.67 | 0.916493 |
Target: 5'- cUACC-CCgAGCucuucuACCUGGUgGAcgugcUGGUGCa -3' miRNA: 3'- -GUGGaGG-UCG------UGGACCAgCU-----ACCACG- -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 111280 | 0.67 | 0.910802 |
Target: 5'- cCGCCgugCCAGCGCCgccgCGAUGGa-- -3' miRNA: 3'- -GUGGa--GGUCGUGGaccaGCUACCacg -5' |
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14024 | 5' | -56.7 | NC_003521.1 | + | 123685 | 0.67 | 0.904889 |
Target: 5'- cCAUCUgcgCCAGCugCUGGUCGAUcaucgaGCg -3' miRNA: 3'- -GUGGA---GGUCGugGACCAGCUAcca---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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