miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 176787 1.12 0.002664
Target:  5'- gCACCUCCAGCACCUGGUCGAUGGUGCg -3'
miRNA:   3'- -GUGGAGGUCGUGGACCAGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 113262 0.69 0.84998
Target:  5'- aCGCUgaucgCCgAGCACCUGGcCGAcgGcGUGCu -3'
miRNA:   3'- -GUGGa----GG-UCGUGGACCaGCUa-C-CACG- -5'
14024 5' -56.7 NC_003521.1 + 86320 0.68 0.864921
Target:  5'- gGCCgCCAGCACCUGGaUGcUGGaggucuUGCc -3'
miRNA:   3'- gUGGaGGUCGUGGACCaGCuACC------ACG- -5'
14024 5' -56.7 NC_003521.1 + 126274 0.66 0.950089
Target:  5'- gAUCUCgCAaccGCGCCagcGGaaaUCGAUGGUGCc -3'
miRNA:   3'- gUGGAG-GU---CGUGGa--CC---AGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 85261 0.72 0.68921
Target:  5'- cCACCUCCuGCGCC-GGUCGcaGGcGCu -3'
miRNA:   3'- -GUGGAGGuCGUGGaCCAGCuaCCaCG- -5'
14024 5' -56.7 NC_003521.1 + 173970 0.72 0.698961
Target:  5'- aCACgUCCAGCACCUGGaUGAacaGGUcgucGCg -3'
miRNA:   3'- -GUGgAGGUCGUGGACCaGCUa--CCA----CG- -5'
14024 5' -56.7 NC_003521.1 + 149317 0.71 0.718298
Target:  5'- cCACCUCCAuuGCCU-GUUGuUGGUGCc -3'
miRNA:   3'- -GUGGAGGUcgUGGAcCAGCuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 208996 0.71 0.746765
Target:  5'- cCACCUUCGGCGCCcgGGcCGAgacGGcGCu -3'
miRNA:   3'- -GUGGAGGUCGUGGa-CCaGCUa--CCaCG- -5'
14024 5' -56.7 NC_003521.1 + 75136 0.69 0.82126
Target:  5'- gGCUUUCGGCggccgaccuggggauGCCUGGaCGcAUGGUGCc -3'
miRNA:   3'- gUGGAGGUCG---------------UGGACCaGC-UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 76401 0.69 0.84998
Target:  5'- gCGCUgCUAGCACCagcggcGGUgUGGUGGUGCu -3'
miRNA:   3'- -GUGGaGGUCGUGGa-----CCA-GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 127806 0.69 0.8262
Target:  5'- gCGCa-CCAGCACgUgccGGUCGAaGGUGCc -3'
miRNA:   3'- -GUGgaGGUCGUGgA---CCAGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 28358 0.7 0.80951
Target:  5'- gGCCaCgGGCcugGCCUGGUUGAUGGcgugGCa -3'
miRNA:   3'- gUGGaGgUCG---UGGACCAGCUACCa---CG- -5'
14024 5' -56.7 NC_003521.1 + 182354 0.75 0.532217
Target:  5'- gGCCaUUGGCAgacCCUGGUCGAcgUGGUGCg -3'
miRNA:   3'- gUGGaGGUCGU---GGACCAGCU--ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 84829 0.69 0.84223
Target:  5'- gCAgCUCgcgCAGCGCCUccUCGGUGGUGUa -3'
miRNA:   3'- -GUgGAG---GUCGUGGAccAGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 36696 0.73 0.610258
Target:  5'- gGgCUCCGGCGCCUGGccCGAgcaGGUGg -3'
miRNA:   3'- gUgGAGGUCGUGGACCa-GCUa--CCACg -5'
14024 5' -56.7 NC_003521.1 + 24865 0.71 0.756077
Target:  5'- cCACCUCUcGCAgCaGGUCcucAUGGUGCg -3'
miRNA:   3'- -GUGGAGGuCGUgGaCCAGc--UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 171381 0.69 0.84223
Target:  5'- gCGCCUCgC-GCACCUGcGacuccaccgUGGUGGUGCg -3'
miRNA:   3'- -GUGGAG-GuCGUGGAC-Ca--------GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 72163 0.68 0.856798
Target:  5'- gACCUCCGGCGCCgucGGcaugcccUCGAUGaccgugGCg -3'
miRNA:   3'- gUGGAGGUCGUGGa--CC-------AGCUACca----CG- -5'
14024 5' -56.7 NC_003521.1 + 194268 0.72 0.679415
Target:  5'- cCACCgcUUCAGCACCcGGcgCGAggcccUGGUGCg -3'
miRNA:   3'- -GUGG--AGGUCGUGGaCCa-GCU-----ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 16405 0.72 0.698961
Target:  5'- cCACCaCgCAGCGCCUGGccggCGA-GGUGUa -3'
miRNA:   3'- -GUGGaG-GUCGUGGACCa---GCUaCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.