miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 109161 0.7 0.80951
Target:  5'- -uCCUCCAGCgagauguugaagGCCgccacgaugGGUCGcGUGGUGUg -3'
miRNA:   3'- guGGAGGUCG------------UGGa--------CCAGC-UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 110835 0.68 0.885848
Target:  5'- cCGCCgCCGGCGCagcGGcagCGAcGGUGCa -3'
miRNA:   3'- -GUGGaGGUCGUGga-CCa--GCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 111280 0.67 0.910802
Target:  5'- cCGCCgugCCAGCGCCgccgCGAUGGa-- -3'
miRNA:   3'- -GUGGa--GGUCGUGGaccaGCUACCacg -5'
14024 5' -56.7 NC_003521.1 + 111545 0.69 0.8262
Target:  5'- gUACCgCCGGCGCCUcuaccUCGA-GGUGCg -3'
miRNA:   3'- -GUGGaGGUCGUGGAcc---AGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 113005 0.66 0.937025
Target:  5'- cCACC-CgGGCACCU--UCGAccggcacgugcUGGUGCg -3'
miRNA:   3'- -GUGGaGgUCGUGGAccAGCU-----------ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 113055 0.67 0.921961
Target:  5'- gCGCCgugcUCCAGCACCUuccgggcuacgaGG-CGcagacggccgccGUGGUGCa -3'
miRNA:   3'- -GUGG----AGGUCGUGGA------------CCaGC------------UACCACG- -5'
14024 5' -56.7 NC_003521.1 + 113114 0.67 0.916493
Target:  5'- cUACC-CCgAGCucuucuACCUGGUgGAcgugcUGGUGCa -3'
miRNA:   3'- -GUGGaGG-UCG------UGGACCAgCU-----ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 113262 0.69 0.84998
Target:  5'- aCGCUgaucgCCgAGCACCUGGcCGAcgGcGUGCu -3'
miRNA:   3'- -GUGGa----GG-UCGUGGACCaGCUa-C-CACG- -5'
14024 5' -56.7 NC_003521.1 + 113558 0.66 0.945954
Target:  5'- gACCaCCAGCGCgaGGaggacgCGGUGGgGCu -3'
miRNA:   3'- gUGGaGGUCGUGgaCCa-----GCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 114370 0.68 0.871391
Target:  5'- gGCCUCCAuGCuguacaagaucucGCCgGuGUCGcUGGUGCu -3'
miRNA:   3'- gUGGAGGU-CG-------------UGGaC-CAGCuACCACG- -5'
14024 5' -56.7 NC_003521.1 + 119793 0.79 0.314347
Target:  5'- cCACCuUCCGGCGCCagcgGGgcgacaCGGUGGUGCg -3'
miRNA:   3'- -GUGG-AGGUCGUGGa---CCa-----GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 121751 0.69 0.84998
Target:  5'- aCACCUCUuGCccgaCUGGUggaUGAUGGUGUc -3'
miRNA:   3'- -GUGGAGGuCGug--GACCA---GCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 122679 0.66 0.942045
Target:  5'- gGCgC-CCAGCACCgacagcugcggggccGGUCGGUuGUGCa -3'
miRNA:   3'- gUG-GaGGUCGUGGa--------------CCAGCUAcCACG- -5'
14024 5' -56.7 NC_003521.1 + 123685 0.67 0.904889
Target:  5'- cCAUCUgcgCCAGCugCUGGUCGAUcaucgaGCg -3'
miRNA:   3'- -GUGGA---GGUCGugGACCAGCUAcca---CG- -5'
14024 5' -56.7 NC_003521.1 + 126274 0.66 0.950089
Target:  5'- gAUCUCgCAaccGCGCCagcGGaaaUCGAUGGUGCc -3'
miRNA:   3'- gUGGAG-GU---CGUGGa--CC---AGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 126815 0.73 0.639947
Target:  5'- gCACCUCCAGCACCU--UCGc--GUGCu -3'
miRNA:   3'- -GUGGAGGUCGUGGAccAGCuacCACG- -5'
14024 5' -56.7 NC_003521.1 + 127806 0.69 0.8262
Target:  5'- gCGCa-CCAGCACgUgccGGUCGAaGGUGCc -3'
miRNA:   3'- -GUGgaGGUCGUGgA---CCAGCUaCCACG- -5'
14024 5' -56.7 NC_003521.1 + 130284 0.66 0.945954
Target:  5'- -cUCUCCGGCuACCUGGgCGA-GGccGCg -3'
miRNA:   3'- guGGAGGUCG-UGGACCaGCUaCCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 134285 0.68 0.88181
Target:  5'- gCugCUCCAGCAgguacucgaugggguCgUGGUUGAgcuugaUGGUGUa -3'
miRNA:   3'- -GugGAGGUCGU---------------GgACCAGCU------ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 135694 0.71 0.727867
Target:  5'- gGCCUCUuugAGCACCUGa-CGGUGGaaUGCg -3'
miRNA:   3'- gUGGAGG---UCGUGGACcaGCUACC--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.