Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14026 | 3' | -59.1 | NC_003521.1 | + | 215294 | 0.75 | 0.362644 |
Target: 5'- cAGGccACCGcCAGCGGCGGCagguUGAUGAGc -3' miRNA: 3'- -UCC--UGGCaGUCGCCGCCGc---ACUACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 123616 | 0.74 | 0.410596 |
Target: 5'- gGGGcaGCCGccgUAGCaGCGGCGUGAUGAu -3' miRNA: 3'- -UCC--UGGCa--GUCGcCGCCGCACUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 135764 | 0.73 | 0.471241 |
Target: 5'- cGGGACCGaaGGCGGUGGCGgcaGUGGc -3' miRNA: 3'- -UCCUGGCagUCGCCGCCGCac-UACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 78137 | 0.73 | 0.498592 |
Target: 5'- uGGGCgCGUUAGCGGCGGCGgccgcGAAc -3' miRNA: 3'- uCCUG-GCAGUCGCCGCCGCacua-CUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 92007 | 0.72 | 0.545645 |
Target: 5'- cGGGAgCGgcgaggcgCGGCGGCGGCGgcGGUGGGu -3' miRNA: 3'- -UCCUgGCa-------GUCGCCGCCGCa-CUACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 124028 | 0.71 | 0.564876 |
Target: 5'- cGGugCGUCAGCGGCugcuuGGCGUuGUGc- -3' miRNA: 3'- uCCugGCAGUCGCCG-----CCGCAcUACuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 152063 | 0.71 | 0.564876 |
Target: 5'- cAGGuCCGUCAGCuucaGCuGCGUGAUGGc -3' miRNA: 3'- -UCCuGGCAGUCGc---CGcCGCACUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 19982 | 0.69 | 0.730134 |
Target: 5'- uGGGACUGUguucgUGGCuGGCGGCGUGGa--- -3' miRNA: 3'- -UCCUGGCA-----GUCG-CCGCCGCACUacuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 128782 | 0.69 | 0.719712 |
Target: 5'- cAGGauGCUGUCGGUGGCGGCcuccaccaggcgcGUGAgGAAc -3' miRNA: 3'- -UCC--UGGCAGUCGCCGCCG-------------CACUaCUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 224820 | 0.69 | 0.711122 |
Target: 5'- uAGGG-CGUCuGCGGCuGGCGguaGAUGGAc -3' miRNA: 3'- -UCCUgGCAGuCGCCG-CCGCa--CUACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 99190 | 0.69 | 0.691864 |
Target: 5'- gGGGGCUGaaGGUGGCGGCGgagGAUa-- -3' miRNA: 3'- -UCCUGGCagUCGCCGCCGCa--CUAcuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 49080 | 0.71 | 0.588178 |
Target: 5'- uGGACCGUCGGacggggGGCGauauccacaaagugcGCGUGGUGAc -3' miRNA: 3'- uCCUGGCAGUCg-----CCGC---------------CGCACUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 218063 | 0.71 | 0.581361 |
Target: 5'- gAGGuccACCGUCucgaagcacagcgaGGCGGCGGCGccGGUGAc -3' miRNA: 3'- -UCC---UGGCAG--------------UCGCCGCCGCa-CUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 190557 | 0.71 | 0.564876 |
Target: 5'- cGGAcCCGgcugCAGCGGCaguacGGCGUGAUcGAGg -3' miRNA: 3'- uCCU-GGCa---GUCGCCG-----CCGCACUA-CUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 169443 | 0.72 | 0.545645 |
Target: 5'- cGGACgacggCGUCGGCGGCGGCG-GGUu-- -3' miRNA: 3'- uCCUG-----GCAGUCGCCGCCGCaCUAcuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 184842 | 0.73 | 0.480276 |
Target: 5'- uGGACCGgCuGCGGCcccugcacaucGGCGUGGUGGGg -3' miRNA: 3'- uCCUGGCaGuCGCCG-----------CCGCACUACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 98535 | 0.74 | 0.427433 |
Target: 5'- uGGGCCGcugCAGCGGCGGCG-GGUc-- -3' miRNA: 3'- uCCUGGCa--GUCGCCGCCGCaCUAcuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 165143 | 0.76 | 0.347547 |
Target: 5'- uGGACCG-CGGUGcCGGCGUGAUGGu -3' miRNA: 3'- uCCUGGCaGUCGCcGCCGCACUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 175036 | 0.79 | 0.236496 |
Target: 5'- aGGGGCCGgccgaaguugucCGGCGGCGGUGUGAUGc- -3' miRNA: 3'- -UCCUGGCa-----------GUCGCCGCCGCACUACuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 172324 | 0.66 | 0.872771 |
Target: 5'- cAGGcCgGUC-GCGGCGGaCG-GGUGAGg -3' miRNA: 3'- -UCCuGgCAGuCGCCGCC-GCaCUACUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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