Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14026 | 3' | -59.1 | NC_003521.1 | + | 76399 | 0.71 | 0.613609 |
Target: 5'- uGGcGCUGcuagcacCAGCGGCGGUGUGGUGGu -3' miRNA: 3'- uCC-UGGCa------GUCGCCGCCGCACUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 104021 | 0.7 | 0.623419 |
Target: 5'- cGGGGUCGUCGGCgGGCaGCGUGAccgUGAGc -3' miRNA: 3'- -UCCUGGCAGUCG-CCGcCGCACU---ACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 120537 | 0.7 | 0.623419 |
Target: 5'- aAGGGCCcUCGGCGGCcGGCGgucccgGggGAGc -3' miRNA: 3'- -UCCUGGcAGUCGCCG-CCGCa-----CuaCUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 87719 | 0.7 | 0.633236 |
Target: 5'- --uGCCGUCGcGCgcgcccGGCGGCGUGGUGGg -3' miRNA: 3'- uccUGGCAGU-CG------CCGCCGCACUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 108032 | 0.7 | 0.643052 |
Target: 5'- cGG--CGUCAgGCGGCGGCGgGAUGAc -3' miRNA: 3'- uCCugGCAGU-CGCCGCCGCaCUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 210411 | 0.7 | 0.652859 |
Target: 5'- uGGGACCG-CAGCguGGuCGGCGUGGg--- -3' miRNA: 3'- -UCCUGGCaGUCG--CC-GCCGCACUacuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 99190 | 0.69 | 0.691864 |
Target: 5'- gGGGGCUGaaGGUGGCGGCGgagGAUa-- -3' miRNA: 3'- -UCCUGGCagUCGCCGCCGCa--CUAcuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 123348 | 0.69 | 0.695732 |
Target: 5'- cAGGcCCGUCgccggguguggaggaGGCGGCGGgGgcUGGUGAGa -3' miRNA: 3'- -UCCuGGCAG---------------UCGCCGCCgC--ACUACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 228710 | 0.69 | 0.70152 |
Target: 5'- aAGGAgCG-CGGCGGCGGCaUGAUu-- -3' miRNA: 3'- -UCCUgGCaGUCGCCGCCGcACUAcuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 123560 | 0.69 | 0.70152 |
Target: 5'- -cGGCCGacgaCGGCGGUGGCGgGAUGGc -3' miRNA: 3'- ucCUGGCa---GUCGCCGCCGCaCUACUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 224820 | 0.69 | 0.711122 |
Target: 5'- uAGGG-CGUCuGCGGCuGGCGguaGAUGGAc -3' miRNA: 3'- -UCCUgGCAGuCGCCG-CCGCa--CUACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 128782 | 0.69 | 0.719712 |
Target: 5'- cAGGauGCUGUCGGUGGCGGCcuccaccaggcgcGUGAgGAAc -3' miRNA: 3'- -UCC--UGGCAGUCGCCGCCG-------------CACUaCUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 37209 | 0.69 | 0.720663 |
Target: 5'- gGGGACCG-CGGUuaGGCGGCcucgggGGUGGAg -3' miRNA: 3'- -UCCUGGCaGUCG--CCGCCGca----CUACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 19982 | 0.69 | 0.730134 |
Target: 5'- uGGGACUGUguucgUGGCuGGCGGCGUGGa--- -3' miRNA: 3'- -UCCUGGCA-----GUCG-CCGCCGCACUacuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 31024 | 0.68 | 0.739526 |
Target: 5'- gAGGACgCGUUcGUGGUGGUGgggGGUGGGa -3' miRNA: 3'- -UCCUG-GCAGuCGCCGCCGCa--CUACUU- -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 200286 | 0.68 | 0.739526 |
Target: 5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3' miRNA: 3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 240607 | 0.68 | 0.739526 |
Target: 5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3' miRNA: 3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 58 | 0.68 | 0.739526 |
Target: 5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3' miRNA: 3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 171670 | 0.68 | 0.74326 |
Target: 5'- cGGGAgCGUCGGCGGCaugacgagcaacaaGCGUGAcGAc -3' miRNA: 3'- -UCCUgGCAGUCGCCGc-------------CGCACUaCUu -5' |
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14026 | 3' | -59.1 | NC_003521.1 | + | 17758 | 0.68 | 0.748833 |
Target: 5'- gGGGAacuggccguaCCGcCGGCGGCGGaCGgucaGGUGAAg -3' miRNA: 3'- -UCCU----------GGCaGUCGCCGCC-GCa---CUACUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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