miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 3' -59.1 NC_003521.1 + 172077 1.06 0.003687
Target:  5'- cAGGACCGUCAGCGGCGGCGUGAUGAAg -3'
miRNA:   3'- -UCCUGGCAGUCGCCGCCGCACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 45540 0.83 0.126761
Target:  5'- cGGGcgccCCGUCAGCGGCGGCGaaUGGUGAGc -3'
miRNA:   3'- -UCCu---GGCAGUCGCCGCCGC--ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 168433 0.8 0.183126
Target:  5'- cAGGGCCG-CGGCGGCgGGCGUGAaGAGc -3'
miRNA:   3'- -UCCUGGCaGUCGCCG-CCGCACUaCUU- -5'
14026 3' -59.1 NC_003521.1 + 175036 0.79 0.236496
Target:  5'- aGGGGCCGgccgaaguugucCGGCGGCGGUGUGAUGc- -3'
miRNA:   3'- -UCCUGGCa-----------GUCGCCGCCGCACUACuu -5'
14026 3' -59.1 NC_003521.1 + 165143 0.76 0.347547
Target:  5'- uGGACCG-CGGUGcCGGCGUGAUGGu -3'
miRNA:   3'- uCCUGGCaGUCGCcGCCGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 215294 0.75 0.362644
Target:  5'- cAGGccACCGcCAGCGGCGGCagguUGAUGAGc -3'
miRNA:   3'- -UCC--UGGCaGUCGCCGCCGc---ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 123616 0.74 0.410596
Target:  5'- gGGGcaGCCGccgUAGCaGCGGCGUGAUGAu -3'
miRNA:   3'- -UCC--UGGCa--GUCGcCGCCGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 98535 0.74 0.427433
Target:  5'- uGGGCCGcugCAGCGGCGGCG-GGUc-- -3'
miRNA:   3'- uCCUGGCa--GUCGCCGCCGCaCUAcuu -5'
14026 3' -59.1 NC_003521.1 + 135764 0.73 0.471241
Target:  5'- cGGGACCGaaGGCGGUGGCGgcaGUGGc -3'
miRNA:   3'- -UCCUGGCagUCGCCGCCGCac-UACUu -5'
14026 3' -59.1 NC_003521.1 + 184842 0.73 0.480276
Target:  5'- uGGACCGgCuGCGGCcccugcacaucGGCGUGGUGGGg -3'
miRNA:   3'- uCCUGGCaGuCGCCG-----------CCGCACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 78137 0.73 0.498592
Target:  5'- uGGGCgCGUUAGCGGCGGCGgccgcGAAc -3'
miRNA:   3'- uCCUG-GCAGUCGCCGCCGCacua-CUU- -5'
14026 3' -59.1 NC_003521.1 + 169443 0.72 0.545645
Target:  5'- cGGACgacggCGUCGGCGGCGGCG-GGUu-- -3'
miRNA:   3'- uCCUG-----GCAGUCGCCGCCGCaCUAcuu -5'
14026 3' -59.1 NC_003521.1 + 92007 0.72 0.545645
Target:  5'- cGGGAgCGgcgaggcgCGGCGGCGGCGgcGGUGGGu -3'
miRNA:   3'- -UCCUgGCa-------GUCGCCGCCGCa-CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 152063 0.71 0.564876
Target:  5'- cAGGuCCGUCAGCuucaGCuGCGUGAUGGc -3'
miRNA:   3'- -UCCuGGCAGUCGc---CGcCGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 124028 0.71 0.564876
Target:  5'- cGGugCGUCAGCGGCugcuuGGCGUuGUGc- -3'
miRNA:   3'- uCCugGCAGUCGCCG-----CCGCAcUACuu -5'
14026 3' -59.1 NC_003521.1 + 190557 0.71 0.564876
Target:  5'- cGGAcCCGgcugCAGCGGCaguacGGCGUGAUcGAGg -3'
miRNA:   3'- uCCU-GGCa---GUCGCCG-----CCGCACUA-CUU- -5'
14026 3' -59.1 NC_003521.1 + 218063 0.71 0.581361
Target:  5'- gAGGuccACCGUCucgaagcacagcgaGGCGGCGGCGccGGUGAc -3'
miRNA:   3'- -UCC---UGGCAG--------------UCGCCGCCGCa-CUACUu -5'
14026 3' -59.1 NC_003521.1 + 49080 0.71 0.588178
Target:  5'- uGGACCGUCGGacggggGGCGauauccacaaagugcGCGUGGUGAc -3'
miRNA:   3'- uCCUGGCAGUCg-----CCGC---------------CGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 122658 0.71 0.594033
Target:  5'- cGGGCguCGUCuGCGGCGGUGgGGUGGc -3'
miRNA:   3'- uCCUG--GCAGuCGCCGCCGCaCUACUu -5'
14026 3' -59.1 NC_003521.1 + 76399 0.71 0.613609
Target:  5'- uGGcGCUGcuagcacCAGCGGCGGUGUGGUGGu -3'
miRNA:   3'- uCC-UGGCa------GUCGCCGCCGCACUACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.