miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 3' -59.1 NC_003521.1 + 58 0.68 0.739526
Target:  5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3'
miRNA:   3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5'
14026 3' -59.1 NC_003521.1 + 7978 0.68 0.776154
Target:  5'- cGGGAggGUCcGCGGCGGCG-GggGAGg -3'
miRNA:   3'- -UCCUggCAGuCGCCGCCGCaCuaCUU- -5'
14026 3' -59.1 NC_003521.1 + 17758 0.68 0.748833
Target:  5'- gGGGAacuggccguaCCGcCGGCGGCGGaCGgucaGGUGAAg -3'
miRNA:   3'- -UCCU----------GGCaGUCGCCGCC-GCa---CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 19982 0.69 0.730134
Target:  5'- uGGGACUGUguucgUGGCuGGCGGCGUGGa--- -3'
miRNA:   3'- -UCCUGGCA-----GUCG-CCGCCGCACUacuu -5'
14026 3' -59.1 NC_003521.1 + 31024 0.68 0.739526
Target:  5'- gAGGACgCGUUcGUGGUGGUGgggGGUGGGa -3'
miRNA:   3'- -UCCUG-GCAGuCGCCGCCGCa--CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 37209 0.69 0.720663
Target:  5'- gGGGACCG-CGGUuaGGCGGCcucgggGGUGGAg -3'
miRNA:   3'- -UCCUGGCaGUCG--CCGCCGca----CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 37450 0.67 0.802409
Target:  5'- aGGcGACCG-CGGCGGUuucugcggaGGCGUGuGUGGAc -3'
miRNA:   3'- -UC-CUGGCaGUCGCCG---------CCGCAC-UACUU- -5'
14026 3' -59.1 NC_003521.1 + 38576 0.66 0.865673
Target:  5'- gAGGAcCCGUCA-UGGuCGGCGUuuUGAAg -3'
miRNA:   3'- -UCCU-GGCAGUcGCC-GCCGCAcuACUU- -5'
14026 3' -59.1 NC_003521.1 + 41097 0.66 0.865673
Target:  5'- cGGACCGcUCAacGCGGUGGUGcUGGUc-- -3'
miRNA:   3'- uCCUGGC-AGU--CGCCGCCGC-ACUAcuu -5'
14026 3' -59.1 NC_003521.1 + 45540 0.83 0.126761
Target:  5'- cGGGcgccCCGUCAGCGGCGGCGaaUGGUGAGc -3'
miRNA:   3'- -UCCu---GGCAGUCGCCGCCGC--ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 49080 0.71 0.588178
Target:  5'- uGGACCGUCGGacggggGGCGauauccacaaagugcGCGUGGUGAc -3'
miRNA:   3'- uCCUGGCAGUCg-----CCGC---------------CGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 50499 0.66 0.872771
Target:  5'- --aGCgUGUCGGCGGCGGUGgaGAUGGu -3'
miRNA:   3'- uccUG-GCAGUCGCCGCCGCa-CUACUu -5'
14026 3' -59.1 NC_003521.1 + 57052 0.68 0.748833
Target:  5'- cGGGACCGUCgcagcaguAGCaGCGGCGacgagGggGAAa -3'
miRNA:   3'- -UCCUGGCAG--------UCGcCGCCGCa----CuaCUU- -5'
14026 3' -59.1 NC_003521.1 + 57276 0.66 0.872771
Target:  5'- aAGcGACCcagcagcagGUCGGUGcGCGGCGacUGGUGGAu -3'
miRNA:   3'- -UC-CUGG---------CAGUCGC-CGCCGC--ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 69074 0.67 0.827389
Target:  5'- gAGuGACCcguGUCAuGaUGGUGGCGUGGUGGu -3'
miRNA:   3'- -UC-CUGG---CAGU-C-GCCGCCGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 74014 0.67 0.802409
Target:  5'- uGGAUCGUCgcagcagcAGCGGCGGCGg------ -3'
miRNA:   3'- uCCUGGCAG--------UCGCCGCCGCacuacuu -5'
14026 3' -59.1 NC_003521.1 + 76399 0.71 0.613609
Target:  5'- uGGcGCUGcuagcacCAGCGGCGGUGUGGUGGu -3'
miRNA:   3'- uCC-UGGCa------GUCGCCGCCGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 78137 0.73 0.498592
Target:  5'- uGGGCgCGUUAGCGGCGGCGgccgcGAAc -3'
miRNA:   3'- uCCUG-GCAGUCGCCGCCGCacua-CUU- -5'
14026 3' -59.1 NC_003521.1 + 83595 0.71 0.613609
Target:  5'- cGGACC-UC-GCGGCGGCGU-AUGAc -3'
miRNA:   3'- uCCUGGcAGuCGCCGCCGCAcUACUu -5'
14026 3' -59.1 NC_003521.1 + 86700 0.67 0.810887
Target:  5'- cGGGCCG-CGGCGGCgacgacgaGGCgGUGAUcGAc -3'
miRNA:   3'- uCCUGGCaGUCGCCG--------CCG-CACUA-CUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.