miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 3' -59.1 NC_003521.1 + 240607 0.68 0.739526
Target:  5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3'
miRNA:   3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5'
14026 3' -59.1 NC_003521.1 + 233631 0.67 0.810887
Target:  5'- gAGGGCaauuUCAGCGGCGGCGccguacUGGAg -3'
miRNA:   3'- -UCCUGgc--AGUCGCCGCCGCacu---ACUU- -5'
14026 3' -59.1 NC_003521.1 + 228710 0.69 0.70152
Target:  5'- aAGGAgCG-CGGCGGCGGCaUGAUu-- -3'
miRNA:   3'- -UCCUgGCaGUCGCCGCCGcACUAcuu -5'
14026 3' -59.1 NC_003521.1 + 224820 0.69 0.711122
Target:  5'- uAGGG-CGUCuGCGGCuGGCGguaGAUGGAc -3'
miRNA:   3'- -UCCUgGCAGuCGCCG-CCGCa--CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 218709 0.68 0.785035
Target:  5'- gAGGAgaCGgCGGCGGCGGCG-GgcGAGa -3'
miRNA:   3'- -UCCUg-GCaGUCGCCGCCGCaCuaCUU- -5'
14026 3' -59.1 NC_003521.1 + 218063 0.71 0.581361
Target:  5'- gAGGuccACCGUCucgaagcacagcgaGGCGGCGGCGccGGUGAc -3'
miRNA:   3'- -UCC---UGGCAG--------------UCGCCGCCGCa-CUACUu -5'
14026 3' -59.1 NC_003521.1 + 215294 0.75 0.362644
Target:  5'- cAGGccACCGcCAGCGGCGGCagguUGAUGAGc -3'
miRNA:   3'- -UCC--UGGCaGUCGCCGCCGc---ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 210411 0.7 0.652859
Target:  5'- uGGGACCG-CAGCguGGuCGGCGUGGg--- -3'
miRNA:   3'- -UCCUGGCaGUCG--CC-GCCGCACUacuu -5'
14026 3' -59.1 NC_003521.1 + 207438 0.68 0.776154
Target:  5'- aGGGAgaGcggCGGCuGGCGGCGUGuGUGAGu -3'
miRNA:   3'- -UCCUggCa--GUCG-CCGCCGCAC-UACUU- -5'
14026 3' -59.1 NC_003521.1 + 200286 0.68 0.739526
Target:  5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3'
miRNA:   3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5'
14026 3' -59.1 NC_003521.1 + 198457 0.68 0.748833
Target:  5'- -uGGCCGUCGGCuGGCGGUGUcGAc--- -3'
miRNA:   3'- ucCUGGCAGUCG-CCGCCGCA-CUacuu -5'
14026 3' -59.1 NC_003521.1 + 195204 0.67 0.793789
Target:  5'- cGGuGGCCGUCuGCGuCGGCGcUGAUGu- -3'
miRNA:   3'- -UC-CUGGCAGuCGCcGCCGC-ACUACuu -5'
14026 3' -59.1 NC_003521.1 + 193176 0.66 0.865673
Target:  5'- cAGGAgCCGgcgggAGCGGCGgaGCGUGAaGAAg -3'
miRNA:   3'- -UCCU-GGCag---UCGCCGC--CGCACUaCUU- -5'
14026 3' -59.1 NC_003521.1 + 191077 0.66 0.8509
Target:  5'- cGGcGACCGU-GGUGGCGGCG-GcgGGc -3'
miRNA:   3'- -UC-CUGGCAgUCGCCGCCGCaCuaCUu -5'
14026 3' -59.1 NC_003521.1 + 190557 0.71 0.564876
Target:  5'- cGGAcCCGgcugCAGCGGCaguacGGCGUGAUcGAGg -3'
miRNA:   3'- uCCU-GGCa---GUCGCCG-----CCGCACUA-CUU- -5'
14026 3' -59.1 NC_003521.1 + 187791 0.66 0.872771
Target:  5'- uGGACCcacuucgaCAGCGGCGGCGaccUGGguugGGAg -3'
miRNA:   3'- uCCUGGca------GUCGCCGCCGC---ACUa---CUU- -5'
14026 3' -59.1 NC_003521.1 + 186849 0.66 0.85838
Target:  5'- uGGcGGCC--CAGCGGCGGCGUGc---- -3'
miRNA:   3'- -UC-CUGGcaGUCGCCGCCGCACuacuu -5'
14026 3' -59.1 NC_003521.1 + 186758 0.66 0.872771
Target:  5'- uGGGGCuCGgCGGCaucggcggaGGCGGCgGUGGUGGc -3'
miRNA:   3'- -UCCUG-GCaGUCG---------CCGCCG-CACUACUu -5'
14026 3' -59.1 NC_003521.1 + 186617 0.68 0.785035
Target:  5'- aAGGGCUac--GCGGCGGCgGUGGUGGc -3'
miRNA:   3'- -UCCUGGcaguCGCCGCCG-CACUACUu -5'
14026 3' -59.1 NC_003521.1 + 184842 0.73 0.480276
Target:  5'- uGGACCGgCuGCGGCcccugcacaucGGCGUGGUGGGg -3'
miRNA:   3'- uCCUGGCaGuCGCCG-----------CCGCACUACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.