miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 3' -59.1 NC_003521.1 + 233631 0.67 0.810887
Target:  5'- gAGGGCaauuUCAGCGGCGGCGccguacUGGAg -3'
miRNA:   3'- -UCCUGgc--AGUCGCCGCCGCacu---ACUU- -5'
14026 3' -59.1 NC_003521.1 + 86700 0.67 0.810887
Target:  5'- cGGGCCG-CGGCGGCgacgacgaGGCgGUGAUcGAc -3'
miRNA:   3'- uCCUGGCaGUCGCCG--------CCG-CACUA-CUu -5'
14026 3' -59.1 NC_003521.1 + 150533 0.67 0.802409
Target:  5'- cGGGAgCCGUggggucCGGCGGUGGUGgugcgGGUGGu -3'
miRNA:   3'- -UCCU-GGCA------GUCGCCGCCGCa----CUACUu -5'
14026 3' -59.1 NC_003521.1 + 137251 0.67 0.802409
Target:  5'- cGGGGCCGaCGGCGGCaGCGggcaGAgcgGGGg -3'
miRNA:   3'- -UCCUGGCaGUCGCCGcCGCa---CUa--CUU- -5'
14026 3' -59.1 NC_003521.1 + 91872 0.67 0.802409
Target:  5'- cAGGACgG-CGGCGGCGGUGcGAc--- -3'
miRNA:   3'- -UCCUGgCaGUCGCCGCCGCaCUacuu -5'
14026 3' -59.1 NC_003521.1 + 86977 0.67 0.802409
Target:  5'- gGGGGuuGUCuacgauguaGGaGGCGGCGgUGAUGAGg -3'
miRNA:   3'- -UCCUggCAG---------UCgCCGCCGC-ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 37450 0.67 0.802409
Target:  5'- aGGcGACCG-CGGCGGUuucugcggaGGCGUGuGUGGAc -3'
miRNA:   3'- -UC-CUGGCaGUCGCCG---------CCGCAC-UACUU- -5'
14026 3' -59.1 NC_003521.1 + 74014 0.67 0.802409
Target:  5'- uGGAUCGUCgcagcagcAGCGGCGGCGg------ -3'
miRNA:   3'- uCCUGGCAG--------UCGCCGCCGCacuacuu -5'
14026 3' -59.1 NC_003521.1 + 165109 0.67 0.793789
Target:  5'- gAGGAa---CAGCGGCGGCuGUGGUGc- -3'
miRNA:   3'- -UCCUggcaGUCGCCGCCG-CACUACuu -5'
14026 3' -59.1 NC_003521.1 + 195204 0.67 0.793789
Target:  5'- cGGuGGCCGUCuGCGuCGGCGcUGAUGu- -3'
miRNA:   3'- -UC-CUGGCAGuCGCcGCCGC-ACUACuu -5'
14026 3' -59.1 NC_003521.1 + 218709 0.68 0.785035
Target:  5'- gAGGAgaCGgCGGCGGCGGCG-GgcGAGa -3'
miRNA:   3'- -UCCUg-GCaGUCGCCGCCGCaCuaCUU- -5'
14026 3' -59.1 NC_003521.1 + 186617 0.68 0.785035
Target:  5'- aAGGGCUac--GCGGCGGCgGUGGUGGc -3'
miRNA:   3'- -UCCUGGcaguCGCCGCCG-CACUACUu -5'
14026 3' -59.1 NC_003521.1 + 172467 0.68 0.785035
Target:  5'- cAGGGCCGgCAGCGGUgcgccgucGGCGgGAUaGGAa -3'
miRNA:   3'- -UCCUGGCaGUCGCCG--------CCGCaCUA-CUU- -5'
14026 3' -59.1 NC_003521.1 + 7978 0.68 0.776154
Target:  5'- cGGGAggGUCcGCGGCGGCG-GggGAGg -3'
miRNA:   3'- -UCCUggCAGuCGCCGCCGCaCuaCUU- -5'
14026 3' -59.1 NC_003521.1 + 111508 0.68 0.776154
Target:  5'- cGGGCUGgCGGCGGCGGCGc------ -3'
miRNA:   3'- uCCUGGCaGUCGCCGCCGCacuacuu -5'
14026 3' -59.1 NC_003521.1 + 207438 0.68 0.776154
Target:  5'- aGGGAgaGcggCGGCuGGCGGCGUGuGUGAGu -3'
miRNA:   3'- -UCCUggCa--GUCG-CCGCCGCAC-UACUU- -5'
14026 3' -59.1 NC_003521.1 + 91905 0.68 0.767155
Target:  5'- cGGACCcccggauccagGaCGGCGGCGGCGaugcGGUGGAc -3'
miRNA:   3'- uCCUGG-----------CaGUCGCCGCCGCa---CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 17758 0.68 0.748833
Target:  5'- gGGGAacuggccguaCCGcCGGCGGCGGaCGgucaGGUGAAg -3'
miRNA:   3'- -UCCU----------GGCaGUCGCCGCC-GCa---CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 108284 0.68 0.748833
Target:  5'- cGGcACCGagGGCGGUGGUGgcGGUGAc -3'
miRNA:   3'- uCC-UGGCagUCGCCGCCGCa-CUACUu -5'
14026 3' -59.1 NC_003521.1 + 57052 0.68 0.748833
Target:  5'- cGGGACCGUCgcagcaguAGCaGCGGCGacgagGggGAAa -3'
miRNA:   3'- -UCCUGGCAG--------UCGcCGCCGCa----CuaCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.