miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 3' -59.1 NC_003521.1 + 17758 0.68 0.748833
Target:  5'- gGGGAacuggccguaCCGcCGGCGGCGGaCGgucaGGUGAAg -3'
miRNA:   3'- -UCCU----------GGCaGUCGCCGCC-GCa---CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 171670 0.68 0.74326
Target:  5'- cGGGAgCGUCGGCGGCaugacgagcaacaaGCGUGAcGAc -3'
miRNA:   3'- -UCCUgGCAGUCGCCGc-------------CGCACUaCUu -5'
14026 3' -59.1 NC_003521.1 + 31024 0.68 0.739526
Target:  5'- gAGGACgCGUUcGUGGUGGUGgggGGUGGGa -3'
miRNA:   3'- -UCCUG-GCAGuCGCCGCCGCa--CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 240607 0.68 0.739526
Target:  5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3'
miRNA:   3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5'
14026 3' -59.1 NC_003521.1 + 58 0.68 0.739526
Target:  5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3'
miRNA:   3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5'
14026 3' -59.1 NC_003521.1 + 200286 0.68 0.739526
Target:  5'- cGGaACCGguuUCcGCGGCGGCGUGcgGc- -3'
miRNA:   3'- uCC-UGGC---AGuCGCCGCCGCACuaCuu -5'
14026 3' -59.1 NC_003521.1 + 19982 0.69 0.730134
Target:  5'- uGGGACUGUguucgUGGCuGGCGGCGUGGa--- -3'
miRNA:   3'- -UCCUGGCA-----GUCG-CCGCCGCACUacuu -5'
14026 3' -59.1 NC_003521.1 + 37209 0.69 0.720663
Target:  5'- gGGGACCG-CGGUuaGGCGGCcucgggGGUGGAg -3'
miRNA:   3'- -UCCUGGCaGUCG--CCGCCGca----CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 128782 0.69 0.719712
Target:  5'- cAGGauGCUGUCGGUGGCGGCcuccaccaggcgcGUGAgGAAc -3'
miRNA:   3'- -UCC--UGGCAGUCGCCGCCG-------------CACUaCUU- -5'
14026 3' -59.1 NC_003521.1 + 224820 0.69 0.711122
Target:  5'- uAGGG-CGUCuGCGGCuGGCGguaGAUGGAc -3'
miRNA:   3'- -UCCUgGCAGuCGCCG-CCGCa--CUACUU- -5'
14026 3' -59.1 NC_003521.1 + 123560 0.69 0.70152
Target:  5'- -cGGCCGacgaCGGCGGUGGCGgGAUGGc -3'
miRNA:   3'- ucCUGGCa---GUCGCCGCCGCaCUACUu -5'
14026 3' -59.1 NC_003521.1 + 228710 0.69 0.70152
Target:  5'- aAGGAgCG-CGGCGGCGGCaUGAUu-- -3'
miRNA:   3'- -UCCUgGCaGUCGCCGCCGcACUAcuu -5'
14026 3' -59.1 NC_003521.1 + 123348 0.69 0.695732
Target:  5'- cAGGcCCGUCgccggguguggaggaGGCGGCGGgGgcUGGUGAGa -3'
miRNA:   3'- -UCCuGGCAG---------------UCGCCGCCgC--ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 99190 0.69 0.691864
Target:  5'- gGGGGCUGaaGGUGGCGGCGgagGAUa-- -3'
miRNA:   3'- -UCCUGGCagUCGCCGCCGCa--CUAcuu -5'
14026 3' -59.1 NC_003521.1 + 210411 0.7 0.652859
Target:  5'- uGGGACCG-CAGCguGGuCGGCGUGGg--- -3'
miRNA:   3'- -UCCUGGCaGUCG--CC-GCCGCACUacuu -5'
14026 3' -59.1 NC_003521.1 + 108032 0.7 0.643052
Target:  5'- cGG--CGUCAgGCGGCGGCGgGAUGAc -3'
miRNA:   3'- uCCugGCAGU-CGCCGCCGCaCUACUu -5'
14026 3' -59.1 NC_003521.1 + 87719 0.7 0.633236
Target:  5'- --uGCCGUCGcGCgcgcccGGCGGCGUGGUGGg -3'
miRNA:   3'- uccUGGCAGU-CG------CCGCCGCACUACUu -5'
14026 3' -59.1 NC_003521.1 + 120537 0.7 0.623419
Target:  5'- aAGGGCCcUCGGCGGCcGGCGgucccgGggGAGc -3'
miRNA:   3'- -UCCUGGcAGUCGCCG-CCGCa-----CuaCUU- -5'
14026 3' -59.1 NC_003521.1 + 104021 0.7 0.623419
Target:  5'- cGGGGUCGUCGGCgGGCaGCGUGAccgUGAGc -3'
miRNA:   3'- -UCCUGGCAGUCG-CCGcCGCACU---ACUU- -5'
14026 3' -59.1 NC_003521.1 + 83595 0.71 0.613609
Target:  5'- cGGACC-UC-GCGGCGGCGU-AUGAc -3'
miRNA:   3'- uCCUGGcAGuCGCCGCCGCAcUACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.