miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 148896 0.67 0.862635
Target:  5'- uGGCCGACGccgaggagcGcCGCCGCGG-CAUcGAGc- -3'
miRNA:   3'- -CCGGCUGC---------C-GCGGUGCCaGUA-CUCaa -5'
14026 5' -58.8 NC_003521.1 + 219063 0.67 0.862635
Target:  5'- cGCC-ACGGCGCC-CaGGUgCAUGAGc- -3'
miRNA:   3'- cCGGcUGCCGCGGuG-CCA-GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 115406 0.67 0.861911
Target:  5'- cGGCCGccACGGCcuccggacucagcGCCGCGGcgCggGGGUg -3'
miRNA:   3'- -CCGGC--UGCCG-------------CGGUGCCa-GuaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 240660 0.67 0.861185
Target:  5'- gGGCCGGCGGguCGUCGCGGggacugguuuggCGUGcGUa -3'
miRNA:   3'- -CCGGCUGCC--GCGGUGCCa-----------GUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 111 0.67 0.861185
Target:  5'- gGGCCGGCGGguCGUCGCGGggacugguuuggCGUGcGUa -3'
miRNA:   3'- -CCGGCUGCC--GCGGUGCCa-----------GUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 200339 0.67 0.861185
Target:  5'- gGGCCGGCGGguCGUCGCGGggacugguuuggCGUGcGUa -3'
miRNA:   3'- -CCGGCUGCC--GCGGUGCCa-----------GUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 164296 0.67 0.860457
Target:  5'- gGGCUGACGGCGCaggcccuggugucgCGCGGUCc------ -3'
miRNA:   3'- -CCGGCUGCCGCG--------------GUGCCAGuacucaa -5'
14026 5' -58.8 NC_003521.1 + 73567 0.67 0.85531
Target:  5'- uGGCCGugGuGCgGgCGCuGGUCAUGAa-- -3'
miRNA:   3'- -CCGGCugC-CG-CgGUG-CCAGUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 122745 0.67 0.85531
Target:  5'- cGCCGACaGGaGCCGCGGU--UGAGc- -3'
miRNA:   3'- cCGGCUG-CCgCGGUGCCAguACUCaa -5'
14026 5' -58.8 NC_003521.1 + 126422 0.67 0.85531
Target:  5'- uGCgCGAUGGCgGCCagGCGGUCGaggaUGAGg- -3'
miRNA:   3'- cCG-GCUGCCG-CGG--UGCCAGU----ACUCaa -5'
14026 5' -58.8 NC_003521.1 + 138049 0.67 0.85531
Target:  5'- gGGCUGugGGUcgcccgcgaccGCCGCGGaCAgcUGAGg- -3'
miRNA:   3'- -CCGGCugCCG-----------CGGUGCCaGU--ACUCaa -5'
14026 5' -58.8 NC_003521.1 + 123339 0.67 0.847802
Target:  5'- -aCCGACGGCcccagcGCCGCGGcCGUGGc-- -3'
miRNA:   3'- ccGGCUGCCG------CGGUGCCaGUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 175115 0.67 0.847802
Target:  5'- gGGCCGccGCGGCGCCGCuGUCc------ -3'
miRNA:   3'- -CCGGC--UGCCGCGGUGcCAGuacucaa -5'
14026 5' -58.8 NC_003521.1 + 185626 0.67 0.840116
Target:  5'- aGCCGGCGGacuGCCAucgcCGGUCGUGu--- -3'
miRNA:   3'- cCGGCUGCCg--CGGU----GCCAGUACucaa -5'
14026 5' -58.8 NC_003521.1 + 169312 0.67 0.840116
Target:  5'- cGGCCGGCGucggucgcaGCGUCGCGGccggCGUG-GUUu -3'
miRNA:   3'- -CCGGCUGC---------CGCGGUGCCa---GUACuCAA- -5'
14026 5' -58.8 NC_003521.1 + 126148 0.67 0.840116
Target:  5'- gGGCCaGGCGGCGUCGCGcuuGUCGUu-GUa -3'
miRNA:   3'- -CCGG-CUGCCGCGGUGC---CAGUAcuCAa -5'
14026 5' -58.8 NC_003521.1 + 92018 0.67 0.840116
Target:  5'- aGGCgCGGCGGCgGCgGCGGUgGguccggGGGUc -3'
miRNA:   3'- -CCG-GCUGCCG-CGgUGCCAgUa-----CUCAa -5'
14026 5' -58.8 NC_003521.1 + 111243 0.67 0.832258
Target:  5'- cGGCCGgcGCGGCGCgGCGGagcagccaUCGUcGGGc- -3'
miRNA:   3'- -CCGGC--UGCCGCGgUGCC--------AGUA-CUCaa -5'
14026 5' -58.8 NC_003521.1 + 168423 0.67 0.832258
Target:  5'- gGGCgGGCGGCaggGCCGCGGcggcgggCGUGAa-- -3'
miRNA:   3'- -CCGgCUGCCG---CGGUGCCa------GUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 168583 0.67 0.832258
Target:  5'- cGGCUGacccaGCGGCGgCAUGGaCAUGGGc- -3'
miRNA:   3'- -CCGGC-----UGCCGCgGUGCCaGUACUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.