miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 97928 0.66 0.883458
Target:  5'- cGGCUGAUGGCGCCGCucucCAaGGGa- -3'
miRNA:   3'- -CCGGCUGCCGCGGUGcca-GUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 89829 0.66 0.883458
Target:  5'- cGGCCGACGGCGUUuc-GUUccGAGg- -3'
miRNA:   3'- -CCGGCUGCCGCGGugcCAGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 119041 0.66 0.883458
Target:  5'- gGGCgGGCGGCGUCGgGGUgcugGAGc- -3'
miRNA:   3'- -CCGgCUGCCGCGGUgCCAgua-CUCaa -5'
14026 5' -58.8 NC_003521.1 + 192452 0.66 0.882792
Target:  5'- gGGCauggCGGCGGCGCCgguuuccaggacgGCGGUCGgcUGAu-- -3'
miRNA:   3'- -CCG----GCUGCCGCGG-------------UGCCAGU--ACUcaa -5'
14026 5' -58.8 NC_003521.1 + 239650 0.66 0.882792
Target:  5'- aGGCCGuccagucccguagGCGGCGCCGUGGcUCccGGGg- -3'
miRNA:   3'- -CCGGC-------------UGCCGCGGUGCC-AGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 39423 0.66 0.882792
Target:  5'- aGGCCGuccagucccguagGCGGCGCCGUGGcUCccGGGg- -3'
miRNA:   3'- -CCGGC-------------UGCCGCGGUGCC-AGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 200344 0.66 0.876714
Target:  5'- cGCCGugGcGCGCCGCGGaCAc----- -3'
miRNA:   3'- cCGGCugC-CGCGGUGCCaGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 59619 0.66 0.876714
Target:  5'- cGGCCccGGCGGCGaCCGCGGcUCGcagGcGUUg -3'
miRNA:   3'- -CCGG--CUGCCGC-GGUGCC-AGUa--CuCAA- -5'
14026 5' -58.8 NC_003521.1 + 128058 0.66 0.876714
Target:  5'- uGGCCGAC-GCGCCGCGcGaugccgccCAUGGGc- -3'
miRNA:   3'- -CCGGCUGcCGCGGUGC-Ca-------GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 218649 0.66 0.876714
Target:  5'- cGGCCGGCGGCGCCuCGucccucuccaccGUCucccGGUa -3'
miRNA:   3'- -CCGGCUGCCGCGGuGC------------CAGuac-UCAa -5'
14026 5' -58.8 NC_003521.1 + 119319 0.66 0.876714
Target:  5'- aGGCgGAUGGUGaugcgcaCGCGGUCGggcagGGGUc -3'
miRNA:   3'- -CCGgCUGCCGCg------GUGCCAGUa----CUCAa -5'
14026 5' -58.8 NC_003521.1 + 150707 0.66 0.876714
Target:  5'- cGCCGGCGGCGaCUggcucuCGGcCGUGGGc- -3'
miRNA:   3'- cCGGCUGCCGC-GGu-----GCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 100131 0.66 0.869771
Target:  5'- cGGCUGGCGGUcCUGCGGgaaggcCGUGGGg- -3'
miRNA:   3'- -CCGGCUGCCGcGGUGCCa-----GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 93499 0.66 0.869771
Target:  5'- aGuCCGAgGGCGCCuaGCGcGUCGUG-GUg -3'
miRNA:   3'- cC-GGCUgCCGCGG--UGC-CAGUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 227026 0.66 0.869066
Target:  5'- cGCUGACGuggaaacGCGCCuCGGUC-UGAGa- -3'
miRNA:   3'- cCGGCUGC-------CGCGGuGCCAGuACUCaa -5'
14026 5' -58.8 NC_003521.1 + 195322 0.67 0.865513
Target:  5'- cGGCuCGACGGCgacguguagaaggcuGCCGUGGUgGUGGGc- -3'
miRNA:   3'- -CCG-GCUGCCG---------------CGGUGCCAgUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 184363 0.67 0.862635
Target:  5'- gGGCCGuggcGCGGCGCCucuCGGaCcUGGGc- -3'
miRNA:   3'- -CCGGC----UGCCGCGGu--GCCaGuACUCaa -5'
14026 5' -58.8 NC_003521.1 + 80097 0.67 0.862635
Target:  5'- uGCCGACGGCGCgacCACGaUguUGGGa- -3'
miRNA:   3'- cCGGCUGCCGCG---GUGCcAguACUCaa -5'
14026 5' -58.8 NC_003521.1 + 219063 0.67 0.862635
Target:  5'- cGCC-ACGGCGCC-CaGGUgCAUGAGc- -3'
miRNA:   3'- cCGGcUGCCGCGGuG-CCA-GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 148896 0.67 0.862635
Target:  5'- uGGCCGACGccgaggagcGcCGCCGCGG-CAUcGAGc- -3'
miRNA:   3'- -CCGGCUGC---------C-GCGGUGCCaGUA-CUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.