miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 218649 0.66 0.876714
Target:  5'- cGGCCGGCGGCGCCuCGucccucuccaccGUCucccGGUa -3'
miRNA:   3'- -CCGGCUGCCGCGGuGC------------CAGuac-UCAa -5'
14026 5' -58.8 NC_003521.1 + 30696 0.66 0.883458
Target:  5'- aGGCUuauaacaacGCGGCGCCGCGGgcUCAUGucgcGUg -3'
miRNA:   3'- -CCGGc--------UGCCGCGGUGCC--AGUACu---CAa -5'
14026 5' -58.8 NC_003521.1 + 113383 0.66 0.883458
Target:  5'- gGGUuaCGGCGGaCGCCGCGGgCGggugcgcaacuuUGAGUUu -3'
miRNA:   3'- -CCG--GCUGCC-GCGGUGCCaGU------------ACUCAA- -5'
14026 5' -58.8 NC_003521.1 + 128058 0.66 0.876714
Target:  5'- uGGCCGAC-GCGCCGCGcGaugccgccCAUGGGc- -3'
miRNA:   3'- -CCGGCUGcCGCGGUGC-Ca-------GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 59619 0.66 0.876714
Target:  5'- cGGCCccGGCGGCGaCCGCGGcUCGcagGcGUUg -3'
miRNA:   3'- -CCGG--CUGCCGC-GGUGCC-AGUa--CuCAA- -5'
14026 5' -58.8 NC_003521.1 + 150707 0.66 0.876714
Target:  5'- cGCCGGCGGCGaCUggcucuCGGcCGUGGGc- -3'
miRNA:   3'- cCGGCUGCCGC-GGu-----GCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 119319 0.66 0.876714
Target:  5'- aGGCgGAUGGUGaugcgcaCGCGGUCGggcagGGGUc -3'
miRNA:   3'- -CCGgCUGCCGCg------GUGCCAGUa----CUCAa -5'
14026 5' -58.8 NC_003521.1 + 100131 0.66 0.869771
Target:  5'- cGGCUGGCGGUcCUGCGGgaaggcCGUGGGg- -3'
miRNA:   3'- -CCGGCUGCCGcGGUGCCa-----GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 191889 0.66 0.889999
Target:  5'- uGGgCGGCGGCGCCACGuccuUCAcgGAc-- -3'
miRNA:   3'- -CCgGCUGCCGCGGUGCc---AGUa-CUcaa -5'
14026 5' -58.8 NC_003521.1 + 20267 0.66 0.896334
Target:  5'- uGCaCGuACaaCGCCACGGUCAUGGGc- -3'
miRNA:   3'- cCG-GC-UGccGCGGUGCCAGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 168779 0.66 0.896334
Target:  5'- aGCCGGagaggaacuCGGCGugauCCAUGGUCA-GAGUg -3'
miRNA:   3'- cCGGCU---------GCCGC----GGUGCCAGUaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 52975 0.66 0.896334
Target:  5'- uGCaGA-GGCGCCACaGGcUCAUGAGg- -3'
miRNA:   3'- cCGgCUgCCGCGGUG-CC-AGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 80543 0.66 0.896334
Target:  5'- uGCCGGCGGagcccagGCCGCucaugaGGUCGUcGAGUc -3'
miRNA:   3'- cCGGCUGCCg------CGGUG------CCAGUA-CUCAa -5'
14026 5' -58.8 NC_003521.1 + 119041 0.66 0.883458
Target:  5'- gGGCgGGCGGCGUCGgGGUgcugGAGc- -3'
miRNA:   3'- -CCGgCUGCCGCGGUgCCAgua-CUCaa -5'
14026 5' -58.8 NC_003521.1 + 192452 0.66 0.882792
Target:  5'- gGGCauggCGGCGGCGCCgguuuccaggacgGCGGUCGgcUGAu-- -3'
miRNA:   3'- -CCG----GCUGCCGCGG-------------UGCCAGU--ACUcaa -5'
14026 5' -58.8 NC_003521.1 + 168981 0.67 0.832258
Target:  5'- cGCCGAC-GCGCguCGGUCGcggGAGg- -3'
miRNA:   3'- cCGGCUGcCGCGguGCCAGUa--CUCaa -5'
14026 5' -58.8 NC_003521.1 + 168583 0.67 0.832258
Target:  5'- cGGCUGacccaGCGGCGgCAUGGaCAUGGGc- -3'
miRNA:   3'- -CCGGC-----UGCCGCgGUGCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 168423 0.67 0.832258
Target:  5'- gGGCgGGCGGCaggGCCGCGGcggcgggCGUGAa-- -3'
miRNA:   3'- -CCGgCUGCCG---CGGUGCCa------GUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 232225 0.67 0.824234
Target:  5'- uGGCUGuGCGGCGUCuguuguUGGUgGUGGGUc -3'
miRNA:   3'- -CCGGC-UGCCGCGGu-----GCCAgUACUCAa -5'
14026 5' -58.8 NC_003521.1 + 223467 0.67 0.824234
Target:  5'- gGGCCGccgcgcCGGCGUCACGGcCcggGAGg- -3'
miRNA:   3'- -CCGGCu-----GCCGCGGUGCCaGua-CUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.