miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 187807 0.7 0.67936
Target:  5'- --gCGGCGGCGaCCugGGUUggGAGUUu -3'
miRNA:   3'- ccgGCUGCCGC-GGugCCAGuaCUCAA- -5'
14026 5' -58.8 NC_003521.1 + 177785 0.7 0.688049
Target:  5'- gGGCCGACGGgGCCuguccgcugguggGCG-UCGUGGGc- -3'
miRNA:   3'- -CCGGCUGCCgCGG-------------UGCcAGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 31005 0.7 0.692862
Target:  5'- gGGCgaCGACGGCGCCGgcgaggacgcguucgUGGUgGUGGGg- -3'
miRNA:   3'- -CCG--GCUGCCGCGGU---------------GCCAgUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 102939 0.7 0.698622
Target:  5'- gGGCCGA-GGCGUCGCGGUCc--AGg- -3'
miRNA:   3'- -CCGGCUgCCGCGGUGCCAGuacUCaa -5'
14026 5' -58.8 NC_003521.1 + 74228 0.7 0.698622
Target:  5'- aGGCCGuCGGCGCCgugACGGUgGacgacGGGUUc -3'
miRNA:   3'- -CCGGCuGCCGCGG---UGCCAgUa----CUCAA- -5'
14026 5' -58.8 NC_003521.1 + 101239 0.7 0.698622
Target:  5'- uGCCG-CGGCGCCACGG-CAaGAc-- -3'
miRNA:   3'- cCGGCuGCCGCGGUGCCaGUaCUcaa -5'
14026 5' -58.8 NC_003521.1 + 210124 0.69 0.715787
Target:  5'- aGCCcGCGGCGCCGCGuuguuauaagccUCAUGAGg- -3'
miRNA:   3'- cCGGcUGCCGCGGUGCc-----------AGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 27806 0.69 0.717682
Target:  5'- cGGCCGGCucgcccGGCGCCAUGGUaCAgauccAGUUu -3'
miRNA:   3'- -CCGGCUG------CCGCGGUGCCA-GUac---UCAA- -5'
14026 5' -58.8 NC_003521.1 + 77415 0.69 0.717682
Target:  5'- cGGCagccgaCGACGGgGCCACGGcCGaGAGg- -3'
miRNA:   3'- -CCG------GCUGCCgCGGUGCCaGUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 137485 0.69 0.735544
Target:  5'- cGCCGgcgugucGCGGCGCCGCgaGGUC-UGGGa- -3'
miRNA:   3'- cCGGC-------UGCCGCGGUG--CCAGuACUCaa -5'
14026 5' -58.8 NC_003521.1 + 74175 0.69 0.736476
Target:  5'- uGGCCGACuGCGCCGCGG-CGc----- -3'
miRNA:   3'- -CCGGCUGcCGCGGUGCCaGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 88073 0.69 0.739268
Target:  5'- uGGUCGGCGGCGCCcgugaccACGGgccacucggcgaaguUCAUGgAGUc -3'
miRNA:   3'- -CCGGCUGCCGCGG-------UGCC---------------AGUAC-UCAa -5'
14026 5' -58.8 NC_003521.1 + 191707 0.69 0.745754
Target:  5'- aGCa-GCGGCGCCGCGGUCAc----- -3'
miRNA:   3'- cCGgcUGCCGCGGUGCCAGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 209731 0.69 0.745754
Target:  5'- aGGUCGugcgcaGCGGCaGCCACGGcagCcgGAGUa -3'
miRNA:   3'- -CCGGC------UGCCG-CGGUGCCa--GuaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 150510 0.69 0.745754
Target:  5'- cGCCGGCGGgGCCcugcuaggaGCGGgagcCGUGGGg- -3'
miRNA:   3'- cCGGCUGCCgCGG---------UGCCa---GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 164453 0.69 0.745754
Target:  5'- cGGCCG-CGGcCGUCACGGUCGc----- -3'
miRNA:   3'- -CCGGCuGCC-GCGGUGCCAGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 102981 0.69 0.75494
Target:  5'- uGGCgGgGCGGCccaGCCGCGG-CGUGAGc- -3'
miRNA:   3'- -CCGgC-UGCCG---CGGUGCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 213730 0.69 0.75494
Target:  5'- aGCCaGACGGCGCCGCagaaGGcCGUG-GUg -3'
miRNA:   3'- cCGG-CUGCCGCGGUG----CCaGUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 59168 0.69 0.764029
Target:  5'- uGCgGcACGGCGCCGCGGgCAgucagGAGa- -3'
miRNA:   3'- cCGgC-UGCCGCGGUGCCaGUa----CUCaa -5'
14026 5' -58.8 NC_003521.1 + 7961 0.69 0.764029
Target:  5'- cGCCG-CGGUGUCGCGGcCggGAGg- -3'
miRNA:   3'- cCGGCuGCCGCGGUGCCaGuaCUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.