miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 72983 0.68 0.816052
Target:  5'- aGCCGACGaGCccGCgGCGGUCGUGcccGGg- -3'
miRNA:   3'- cCGGCUGC-CG--CGgUGCCAGUAC---UCaa -5'
14026 5' -58.8 NC_003521.1 + 73567 0.67 0.85531
Target:  5'- uGGCCGugGuGCgGgCGCuGGUCAUGAa-- -3'
miRNA:   3'- -CCGGCugC-CG-CgGUG-CCAGUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 74175 0.69 0.736476
Target:  5'- uGGCCGACuGCGCCGCGG-CGc----- -3'
miRNA:   3'- -CCGGCUGcCGCGGUGCCaGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 74228 0.7 0.698622
Target:  5'- aGGCCGuCGGCGCCgugACGGUgGacgacGGGUUc -3'
miRNA:   3'- -CCGGCuGCCGCGG---UGCCAgUa----CUCAA- -5'
14026 5' -58.8 NC_003521.1 + 76231 0.67 0.832258
Target:  5'- cGGCCGGUGGCGUgGCGGUUAc----- -3'
miRNA:   3'- -CCGGCUGCCGCGgUGCCAGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 77415 0.69 0.717682
Target:  5'- cGGCagccgaCGACGGgGCCACGGcCGaGAGg- -3'
miRNA:   3'- -CCG------GCUGCCgCGGUGCCaGUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 80097 0.67 0.862635
Target:  5'- uGCCGACGGCGCgacCACGaUguUGGGa- -3'
miRNA:   3'- cCGGCUGCCGCG---GUGCcAguACUCaa -5'
14026 5' -58.8 NC_003521.1 + 80543 0.66 0.896334
Target:  5'- uGCCGGCGGagcccagGCCGCucaugaGGUCGUcGAGUc -3'
miRNA:   3'- cCGGCUGCCg------CGGUG------CCAGUA-CUCAa -5'
14026 5' -58.8 NC_003521.1 + 88073 0.69 0.739268
Target:  5'- uGGUCGGCGGCGCCcgugaccACGGgccacucggcgaaguUCAUGgAGUc -3'
miRNA:   3'- -CCGGCUGCCGCGG-------UGCC---------------AGUAC-UCAa -5'
14026 5' -58.8 NC_003521.1 + 89016 0.76 0.37755
Target:  5'- gGGCCccacCGGCGCCACGGcgGUGAGUUc -3'
miRNA:   3'- -CCGGcu--GCCGCGGUGCCagUACUCAA- -5'
14026 5' -58.8 NC_003521.1 + 89591 0.68 0.816052
Target:  5'- aGGCCgcggaagaagauGAagaaGGCGCCGCGGUCAccgUG-GUg -3'
miRNA:   3'- -CCGG------------CUg---CCGCGGUGCCAGU---ACuCAa -5'
14026 5' -58.8 NC_003521.1 + 89829 0.66 0.883458
Target:  5'- cGGCCGACGGCGUUuc-GUUccGAGg- -3'
miRNA:   3'- -CCGGCUGCCGCGGugcCAGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 91200 0.67 0.862635
Target:  5'- cGCCGGCGGCGUCcaGCGccguuucgcgCAUGAGg- -3'
miRNA:   3'- cCGGCUGCCGCGG--UGCca--------GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 92018 0.67 0.840116
Target:  5'- aGGCgCGGCGGCgGCgGCGGUgGguccggGGGUc -3'
miRNA:   3'- -CCG-GCUGCCG-CGgUGCCAgUa-----CUCAa -5'
14026 5' -58.8 NC_003521.1 + 92236 0.68 0.79924
Target:  5'- gGGcCCGACgGGCGCCgcGCGGUCuuuUGGc-- -3'
miRNA:   3'- -CC-GGCUG-CCGCGG--UGCCAGu--ACUcaa -5'
14026 5' -58.8 NC_003521.1 + 93499 0.66 0.869771
Target:  5'- aGuCCGAgGGCGCCuaGCGcGUCGUG-GUg -3'
miRNA:   3'- cC-GGCUgCCGCGG--UGC-CAGUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 97928 0.66 0.883458
Target:  5'- cGGCUGAUGGCGCCGCucucCAaGGGa- -3'
miRNA:   3'- -CCGGCUGCCGCGGUGcca-GUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 99211 0.67 0.824234
Target:  5'- aGGauaCGGCGGgGuCCGCGGUCcuuUGGGg- -3'
miRNA:   3'- -CCg--GCUGCCgC-GGUGCCAGu--ACUCaa -5'
14026 5' -58.8 NC_003521.1 + 100131 0.66 0.869771
Target:  5'- cGGCUGGCGGUcCUGCGGgaaggcCGUGGGg- -3'
miRNA:   3'- -CCGGCUGCCGcGGUGCCa-----GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 100247 0.72 0.54373
Target:  5'- cGGCCGcgaaauccucggGCGGCGCCugGGUgGaGAGc- -3'
miRNA:   3'- -CCGGC------------UGCCGCGGugCCAgUaCUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.