miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 111 0.67 0.861185
Target:  5'- gGGCCGGCGGguCGUCGCGGggacugguuuggCGUGcGUa -3'
miRNA:   3'- -CCGGCUGCC--GCGGUGCCa-----------GUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 5737 0.73 0.487904
Target:  5'- gGGCaCGGCGcGUGUCAUGGUCAUGAc-- -3'
miRNA:   3'- -CCG-GCUGC-CGCGGUGCCAGUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 7656 0.67 0.824234
Target:  5'- cGGCCGccACGGCGgCGCGGaCAgcGGUg -3'
miRNA:   3'- -CCGGC--UGCCGCgGUGCCaGUacUCAa -5'
14026 5' -58.8 NC_003521.1 + 7858 0.67 0.832258
Target:  5'- uGGCgGACGGCcuCCAUGGggAUGAGc- -3'
miRNA:   3'- -CCGgCUGCCGc-GGUGCCagUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 7961 0.69 0.764029
Target:  5'- cGCCG-CGGUGUCGCGGcCggGAGg- -3'
miRNA:   3'- cCGGCuGCCGCGGUGCCaGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 17774 0.67 0.824234
Target:  5'- cGCCGGCGGCGg-ACGGUCAggUGAa-- -3'
miRNA:   3'- cCGGCUGCCGCggUGCCAGU--ACUcaa -5'
14026 5' -58.8 NC_003521.1 + 20267 0.66 0.896334
Target:  5'- uGCaCGuACaaCGCCACGGUCAUGGGc- -3'
miRNA:   3'- cCG-GC-UGccGCGGUGCCAGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 27806 0.69 0.717682
Target:  5'- cGGCCGGCucgcccGGCGCCAUGGUaCAgauccAGUUu -3'
miRNA:   3'- -CCGGCUG------CCGCGGUGCCA-GUac---UCAA- -5'
14026 5' -58.8 NC_003521.1 + 27970 0.68 0.780114
Target:  5'- cGCCaGGCGGCGCuCACGGccacggcggcagCGUGAGc- -3'
miRNA:   3'- cCGG-CUGCCGCG-GUGCCa-----------GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 28855 0.66 0.889999
Target:  5'- aGCugCGGCGGCGCggCACGGUC--GAGUc -3'
miRNA:   3'- cCG--GCUGCCGCG--GUGCCAGuaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 30696 0.66 0.883458
Target:  5'- aGGCUuauaacaacGCGGCGCCGCGGgcUCAUGucgcGUg -3'
miRNA:   3'- -CCGGc--------UGCCGCGGUGCC--AGUACu---CAa -5'
14026 5' -58.8 NC_003521.1 + 31005 0.7 0.692862
Target:  5'- gGGCgaCGACGGCGCCGgcgaggacgcguucgUGGUgGUGGGg- -3'
miRNA:   3'- -CCG--GCUGCCGCGGU---------------GCCAgUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 32685 0.65 0.901857
Target:  5'- uGCCGGaucgaGGCGCCACGGggCuaauauagcuaggGUGGGg- -3'
miRNA:   3'- cCGGCUg----CCGCGGUGCCa-G-------------UACUCaa -5'
14026 5' -58.8 NC_003521.1 + 39423 0.66 0.882792
Target:  5'- aGGCCGuccagucccguagGCGGCGCCGUGGcUCccGGGg- -3'
miRNA:   3'- -CCGGC-------------UGCCGCGGUGCC-AGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 39829 0.71 0.65022
Target:  5'- cGCCGAUGGCGCCugcuuggccucCGG-CGUGGGg- -3'
miRNA:   3'- cCGGCUGCCGCGGu----------GCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 42617 0.68 0.79924
Target:  5'- cGCCGGCGGCGCCGuCGccGcCAUGGa-- -3'
miRNA:   3'- cCGGCUGCCGCGGU-GC--CaGUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 52975 0.66 0.896334
Target:  5'- uGCaGA-GGCGCCACaGGcUCAUGAGg- -3'
miRNA:   3'- cCGgCUgCCGCGGUG-CC-AGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 54452 0.71 0.611215
Target:  5'- gGGCCGACGGgGCgAUGGUUAUcGAc-- -3'
miRNA:   3'- -CCGGCUGCCgCGgUGCCAGUA-CUcaa -5'
14026 5' -58.8 NC_003521.1 + 59168 0.69 0.764029
Target:  5'- uGCgGcACGGCGCCGCGGgCAgucagGAGa- -3'
miRNA:   3'- cCGgC-UGCCGCGGUGCCaGUa----CUCaa -5'
14026 5' -58.8 NC_003521.1 + 59619 0.66 0.876714
Target:  5'- cGGCCccGGCGGCGaCCGCGGcUCGcagGcGUUg -3'
miRNA:   3'- -CCGG--CUGCCGC-GGUGCC-AGUa--CuCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.