miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 32685 0.65 0.901857
Target:  5'- uGCCGGaucgaGGCGCCACGGggCuaauauagcuaggGUGGGg- -3'
miRNA:   3'- cCGGCUg----CCGCGGUGCCa-G-------------UACUCaa -5'
14026 5' -58.8 NC_003521.1 + 108535 0.65 0.901857
Target:  5'- uGGCCuccacguGGCGGCa-CACGGUCAaGAGg- -3'
miRNA:   3'- -CCGG-------CUGCCGcgGUGCCAGUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 80543 0.66 0.896334
Target:  5'- uGCCGGCGGagcccagGCCGCucaugaGGUCGUcGAGUc -3'
miRNA:   3'- cCGGCUGCCg------CGGUG------CCAGUA-CUCAa -5'
14026 5' -58.8 NC_003521.1 + 20267 0.66 0.896334
Target:  5'- uGCaCGuACaaCGCCACGGUCAUGGGc- -3'
miRNA:   3'- cCG-GC-UGccGCGGUGCCAGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 119041 0.66 0.883458
Target:  5'- gGGCgGGCGGCGUCGgGGUgcugGAGc- -3'
miRNA:   3'- -CCGgCUGCCGCGGUgCCAgua-CUCaa -5'
14026 5' -58.8 NC_003521.1 + 239650 0.66 0.882792
Target:  5'- aGGCCGuccagucccguagGCGGCGCCGUGGcUCccGGGg- -3'
miRNA:   3'- -CCGGC-------------UGCCGCGGUGCC-AGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 150707 0.66 0.876714
Target:  5'- cGCCGGCGGCGaCUggcucuCGGcCGUGGGc- -3'
miRNA:   3'- cCGGCUGCCGC-GGu-----GCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 89829 0.66 0.883458
Target:  5'- cGGCCGACGGCGUUuc-GUUccGAGg- -3'
miRNA:   3'- -CCGGCUGCCGCGGugcCAGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 218649 0.66 0.876714
Target:  5'- cGGCCGGCGGCGCCuCGucccucuccaccGUCucccGGUa -3'
miRNA:   3'- -CCGGCUGCCGCGGuGC------------CAGuac-UCAa -5'
14026 5' -58.8 NC_003521.1 + 227026 0.66 0.869066
Target:  5'- cGCUGACGuggaaacGCGCCuCGGUC-UGAGa- -3'
miRNA:   3'- cCGGCUGC-------CGCGGuGCCAGuACUCaa -5'
14026 5' -58.8 NC_003521.1 + 191889 0.66 0.889999
Target:  5'- uGGgCGGCGGCGCCACGuccuUCAcgGAc-- -3'
miRNA:   3'- -CCgGCUGCCGCGGUGCc---AGUa-CUcaa -5'
14026 5' -58.8 NC_003521.1 + 30696 0.66 0.883458
Target:  5'- aGGCUuauaacaacGCGGCGCCGCGGgcUCAUGucgcGUg -3'
miRNA:   3'- -CCGGc--------UGCCGCGGUGCC--AGUACu---CAa -5'
14026 5' -58.8 NC_003521.1 + 192452 0.66 0.882792
Target:  5'- gGGCauggCGGCGGCGCCgguuuccaggacgGCGGUCGgcUGAu-- -3'
miRNA:   3'- -CCG----GCUGCCGCGG-------------UGCCAGU--ACUcaa -5'
14026 5' -58.8 NC_003521.1 + 113383 0.66 0.883458
Target:  5'- gGGUuaCGGCGGaCGCCGCGGgCGggugcgcaacuuUGAGUUu -3'
miRNA:   3'- -CCG--GCUGCC-GCGGUGCCaGU------------ACUCAA- -5'
14026 5' -58.8 NC_003521.1 + 103680 0.66 0.889999
Target:  5'- uGGCCGAaGGUGCUgaugaaccacgACGGUgaCGUGGGg- -3'
miRNA:   3'- -CCGGCUgCCGCGG-----------UGCCA--GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 52975 0.66 0.896334
Target:  5'- uGCaGA-GGCGCCACaGGcUCAUGAGg- -3'
miRNA:   3'- cCGgCUgCCGCGGUG-CC-AGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 168779 0.66 0.896334
Target:  5'- aGCCGGagaggaacuCGGCGugauCCAUGGUCA-GAGUg -3'
miRNA:   3'- cCGGCU---------GCCGC----GGUGCCAGUaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 28855 0.66 0.889999
Target:  5'- aGCugCGGCGGCGCggCACGGUC--GAGUc -3'
miRNA:   3'- cCG--GCUGCCGCG--GUGCCAGuaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 128058 0.66 0.876714
Target:  5'- uGGCCGAC-GCGCCGCGcGaugccgccCAUGGGc- -3'
miRNA:   3'- -CCGGCUGcCGCGGUGC-Ca-------GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 59619 0.66 0.876714
Target:  5'- cGGCCccGGCGGCGaCCGCGGcUCGcagGcGUUg -3'
miRNA:   3'- -CCGG--CUGCCGC-GGUGCC-AGUa--CuCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.