miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 42617 0.68 0.79924
Target:  5'- cGCCGGCGGCGCCGuCGccGcCAUGGa-- -3'
miRNA:   3'- cCGGCUGCCGCGGU-GC--CaGUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 74175 0.69 0.736476
Target:  5'- uGGCCGACuGCGCCGCGG-CGc----- -3'
miRNA:   3'- -CCGGCUGcCGCGGUGCCaGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 88073 0.69 0.739268
Target:  5'- uGGUCGGCGGCGCCcgugaccACGGgccacucggcgaaguUCAUGgAGUc -3'
miRNA:   3'- -CCGGCUGCCGCGG-------UGCC---------------AGUAC-UCAa -5'
14026 5' -58.8 NC_003521.1 + 209731 0.69 0.745754
Target:  5'- aGGUCGugcgcaGCGGCaGCCACGGcagCcgGAGUa -3'
miRNA:   3'- -CCGGC------UGCCG-CGGUGCCa--GuaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 150510 0.69 0.745754
Target:  5'- cGCCGGCGGgGCCcugcuaggaGCGGgagcCGUGGGg- -3'
miRNA:   3'- cCGGCUGCCgCGG---------UGCCa---GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 164453 0.69 0.745754
Target:  5'- cGGCCG-CGGcCGUCACGGUCGc----- -3'
miRNA:   3'- -CCGGCuGCC-GCGGUGCCAGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 213730 0.69 0.75494
Target:  5'- aGCCaGACGGCGCCGCagaaGGcCGUG-GUg -3'
miRNA:   3'- cCGG-CUGCCGCGGUG----CCaGUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 59168 0.69 0.764029
Target:  5'- uGCgGcACGGCGCCGCGGgCAgucagGAGa- -3'
miRNA:   3'- cCGgC-UGCCGCGGUGCCaGUa----CUCaa -5'
14026 5' -58.8 NC_003521.1 + 27970 0.68 0.780114
Target:  5'- cGCCaGGCGGCGCuCACGGccacggcggcagCGUGAGc- -3'
miRNA:   3'- cCGG-CUGCCGCG-GUGCCa-----------GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 137485 0.69 0.735544
Target:  5'- cGCCGgcgugucGCGGCGCCGCgaGGUC-UGGGa- -3'
miRNA:   3'- cCGGC-------UGCCGCGGUG--CCAGuACUCaa -5'
14026 5' -58.8 NC_003521.1 + 77415 0.69 0.717682
Target:  5'- cGGCagccgaCGACGGgGCCACGGcCGaGAGg- -3'
miRNA:   3'- -CCG------GCUGCCgCGGUGCCaGUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 31005 0.7 0.692862
Target:  5'- gGGCgaCGACGGCGCCGgcgaggacgcguucgUGGUgGUGGGg- -3'
miRNA:   3'- -CCG--GCUGCCGCGGU---------------GCCAgUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 5737 0.73 0.487904
Target:  5'- gGGCaCGGCGcGUGUCAUGGUCAUGAc-- -3'
miRNA:   3'- -CCG-GCUGC-CGCGGUGCCAGUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 111175 0.73 0.515512
Target:  5'- cGGCCGccccggcgACGGCGCCGCGGacgGUGGGc- -3'
miRNA:   3'- -CCGGC--------UGCCGCGGUGCCag-UACUCaa -5'
14026 5' -58.8 NC_003521.1 + 168665 0.73 0.534263
Target:  5'- uGCCGACGGCGCCGgaGGUCccuGGUg -3'
miRNA:   3'- cCGGCUGCCGCGGUg-CCAGuacUCAa -5'
14026 5' -58.8 NC_003521.1 + 168638 0.71 0.611215
Target:  5'- uGCUG-CuGCGCCACGGUCAUcGAGg- -3'
miRNA:   3'- cCGGCuGcCGCGGUGCCAGUA-CUCaa -5'
14026 5' -58.8 NC_003521.1 + 118912 0.71 0.611215
Target:  5'- cGCCcucguCGGCGCCGCGG-CGUGGGc- -3'
miRNA:   3'- cCGGcu---GCCGCGGUGCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 137253 0.71 0.65022
Target:  5'- gGGCCGACGGCGgCAgCGGgCAgagcgGGGg- -3'
miRNA:   3'- -CCGGCUGCCGCgGU-GCCaGUa----CUCaa -5'
14026 5' -58.8 NC_003521.1 + 240056 0.71 0.65022
Target:  5'- cGCCGAUGGCGCCugcuuggccucCGG-CGUGGGg- -3'
miRNA:   3'- cCGGCUGCCGCGGu----------GCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 126567 0.7 0.669671
Target:  5'- aGGCCGugGGCagcgggaaGCCGCcGUCGUGccGGUg -3'
miRNA:   3'- -CCGGCugCCG--------CGGUGcCAGUAC--UCAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.