miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 172115 1.07 0.003693
Target:  5'- cGGCCGACGGCGCCACGGUCAUGAGUUc -3'
miRNA:   3'- -CCGGCUGCCGCGGUGCCAGUACUCAA- -5'
14026 5' -58.8 NC_003521.1 + 27806 0.69 0.717682
Target:  5'- cGGCCGGCucgcccGGCGCCAUGGUaCAgauccAGUUu -3'
miRNA:   3'- -CCGGCUG------CCGCGGUGCCA-GUac---UCAA- -5'
14026 5' -58.8 NC_003521.1 + 102981 0.69 0.75494
Target:  5'- uGGCgGgGCGGCccaGCCGCGG-CGUGAGc- -3'
miRNA:   3'- -CCGgC-UGCCG---CGGUGCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 108535 0.65 0.901857
Target:  5'- uGGCCuccacguGGCGGCa-CACGGUCAaGAGg- -3'
miRNA:   3'- -CCGG-------CUGCCGcgGUGCCAGUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 164441 0.72 0.582086
Target:  5'- aGGUgGAgGGCGCCGCGGgccugagCAUGAa-- -3'
miRNA:   3'- -CCGgCUgCCGCGGUGCCa------GUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 162236 0.71 0.601483
Target:  5'- cGCCGACGGCGCUgGCGGg-GUGGGc- -3'
miRNA:   3'- cCGGCUGCCGCGG-UGCCagUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 195541 0.71 0.620961
Target:  5'- uGGCCcaGCGGCGCC-CGGUcCAUGAu-- -3'
miRNA:   3'- -CCGGc-UGCCGCGGuGCCA-GUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 224138 0.71 0.65022
Target:  5'- aGGCCGugGGCcgagucggGCCA-GGUCAgGAGg- -3'
miRNA:   3'- -CCGGCugCCG--------CGGUgCCAGUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 187807 0.7 0.67936
Target:  5'- --gCGGCGGCGaCCugGGUUggGAGUUu -3'
miRNA:   3'- ccgGCUGCCGC-GGugCCAGuaCUCAA- -5'
14026 5' -58.8 NC_003521.1 + 210124 0.69 0.715787
Target:  5'- aGCCcGCGGCGCCGCGuuguuauaagccUCAUGAGg- -3'
miRNA:   3'- cCGGcUGCCGCGGUGCc-----------AGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 74228 0.7 0.698622
Target:  5'- aGGCCGuCGGCGCCgugACGGUgGacgacGGGUUc -3'
miRNA:   3'- -CCGGCuGCCGCGG---UGCCAgUa----CUCAA- -5'
14026 5' -58.8 NC_003521.1 + 198209 0.7 0.659956
Target:  5'- uGGCggCGACGGCGCCgccgGCGGcCGUG-GUa -3'
miRNA:   3'- -CCG--GCUGCCGCGG----UGCCaGUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 161201 0.73 0.524856
Target:  5'- cGCCGA-GGCGCCGCGGUCGc----- -3'
miRNA:   3'- cCGGCUgCCGCGGUGCCAGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 101239 0.7 0.698622
Target:  5'- uGCCG-CGGCGCCACGG-CAaGAc-- -3'
miRNA:   3'- cCGGCuGCCGCGGUGCCaGUaCUcaa -5'
14026 5' -58.8 NC_003521.1 + 100247 0.72 0.54373
Target:  5'- cGGCCGcgaaauccucggGCGGCGCCugGGUgGaGAGc- -3'
miRNA:   3'- -CCGGC------------UGCCGCGGugCCAgUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 39829 0.71 0.65022
Target:  5'- cGCCGAUGGCGCCugcuuggccucCGG-CGUGGGg- -3'
miRNA:   3'- cCGGCUGCCGCGGu----------GCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 102939 0.7 0.698622
Target:  5'- gGGCCGA-GGCGUCGCGGUCc--AGg- -3'
miRNA:   3'- -CCGGCUgCCGCGGUGCCAGuacUCaa -5'
14026 5' -58.8 NC_003521.1 + 191707 0.69 0.745754
Target:  5'- aGCa-GCGGCGCCGCGGUCAc----- -3'
miRNA:   3'- cCGgcUGCCGCGGUGCCAGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 163206 0.72 0.54373
Target:  5'- cGGCCGGCGccgucacgggcGCGCC-CGGUgaCGUGGGUUc -3'
miRNA:   3'- -CCGGCUGC-----------CGCGGuGCCA--GUACUCAA- -5'
14026 5' -58.8 NC_003521.1 + 54452 0.71 0.611215
Target:  5'- gGGCCGACGGgGCgAUGGUUAUcGAc-- -3'
miRNA:   3'- -CCGGCUGCCgCGgUGCCAGUA-CUcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.