miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 5' -58.8 NC_003521.1 + 240660 0.67 0.861185
Target:  5'- gGGCCGGCGGguCGUCGCGGggacugguuuggCGUGcGUa -3'
miRNA:   3'- -CCGGCUGCC--GCGGUGCCa-----------GUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 240056 0.71 0.65022
Target:  5'- cGCCGAUGGCGCCugcuuggccucCGG-CGUGGGg- -3'
miRNA:   3'- cCGGCUGCCGCGGu----------GCCaGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 239650 0.66 0.882792
Target:  5'- aGGCCGuccagucccguagGCGGCGCCGUGGcUCccGGGg- -3'
miRNA:   3'- -CCGGC-------------UGCCGCGGUGCC-AGuaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 236258 0.68 0.781878
Target:  5'- aGGCCGGCGuGUGCCcCGGcCGU-AGUg -3'
miRNA:   3'- -CCGGCUGC-CGCGGuGCCaGUAcUCAa -5'
14026 5' -58.8 NC_003521.1 + 232225 0.67 0.824234
Target:  5'- uGGCUGuGCGGCGUCuguuguUGGUgGUGGGUc -3'
miRNA:   3'- -CCGGC-UGCCGCGGu-----GCCAgUACUCAa -5'
14026 5' -58.8 NC_003521.1 + 227026 0.66 0.869066
Target:  5'- cGCUGACGuggaaacGCGCCuCGGUC-UGAGa- -3'
miRNA:   3'- cCGGCUGC-------CGCGGuGCCAGuACUCaa -5'
14026 5' -58.8 NC_003521.1 + 226918 0.67 0.862635
Target:  5'- aGGUCGuCGGUcucgucgagaccGCUACGGUCGUGGu-- -3'
miRNA:   3'- -CCGGCuGCCG------------CGGUGCCAGUACUcaa -5'
14026 5' -58.8 NC_003521.1 + 224138 0.71 0.65022
Target:  5'- aGGCCGugGGCcgagucggGCCA-GGUCAgGAGg- -3'
miRNA:   3'- -CCGGCugCCG--------CGGUgCCAGUaCUCaa -5'
14026 5' -58.8 NC_003521.1 + 223467 0.67 0.824234
Target:  5'- gGGCCGccgcgcCGGCGUCACGGcCcggGAGg- -3'
miRNA:   3'- -CCGGCu-----GCCGCGGUGCCaGua-CUCaa -5'
14026 5' -58.8 NC_003521.1 + 219063 0.67 0.862635
Target:  5'- cGCC-ACGGCGCC-CaGGUgCAUGAGc- -3'
miRNA:   3'- cCGGcUGCCGCGGuG-CCA-GUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 218649 0.66 0.876714
Target:  5'- cGGCCGGCGGCGCCuCGucccucuccaccGUCucccGGUa -3'
miRNA:   3'- -CCGGCUGCCGCGGuGC------------CAGuac-UCAa -5'
14026 5' -58.8 NC_003521.1 + 218036 0.67 0.824234
Target:  5'- gGGCggCGGCGGCGuCCGCaGGUagAUGAGg- -3'
miRNA:   3'- -CCG--GCUGCCGC-GGUG-CCAg-UACUCaa -5'
14026 5' -58.8 NC_003521.1 + 213730 0.69 0.75494
Target:  5'- aGCCaGACGGCGCCGCagaaGGcCGUG-GUg -3'
miRNA:   3'- cCGG-CUGCCGCGGUG----CCaGUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 210124 0.69 0.715787
Target:  5'- aGCCcGCGGCGCCGCGuuguuauaagccUCAUGAGg- -3'
miRNA:   3'- cCGGcUGCCGCGGUGCc-----------AGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 209731 0.69 0.745754
Target:  5'- aGGUCGugcgcaGCGGCaGCCACGGcagCcgGAGUa -3'
miRNA:   3'- -CCGGC------UGCCG-CGGUGCCa--GuaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 204785 0.68 0.806877
Target:  5'- gGGCUuACGGCgaagaggGCCaagACGGUCGUGGGg- -3'
miRNA:   3'- -CCGGcUGCCG-------CGG---UGCCAGUACUCaa -5'
14026 5' -58.8 NC_003521.1 + 200344 0.66 0.876714
Target:  5'- cGCCGugGcGCGCCGCGGaCAc----- -3'
miRNA:   3'- cCGGCugC-CGCGGUGCCaGUacucaa -5'
14026 5' -58.8 NC_003521.1 + 200339 0.67 0.861185
Target:  5'- gGGCCGGCGGguCGUCGCGGggacugguuuggCGUGcGUa -3'
miRNA:   3'- -CCGGCUGCC--GCGGUGCCa-----------GUACuCAa -5'
14026 5' -58.8 NC_003521.1 + 200030 0.68 0.816052
Target:  5'- aGCUGACcGCGCCGgGaGUCcgGAGUc -3'
miRNA:   3'- cCGGCUGcCGCGGUgC-CAGuaCUCAa -5'
14026 5' -58.8 NC_003521.1 + 198209 0.7 0.659956
Target:  5'- uGGCggCGACGGCGCCgccgGCGGcCGUG-GUa -3'
miRNA:   3'- -CCG--GCUGCCGCGG----UGCCaGUACuCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.