miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 101584 0.67 0.906935
Target:  5'- cGCGCGAggagccccguaCAGGUGGuAGCUCaggacgucgGCCAGGGc -3'
miRNA:   3'- cCGCGCU-----------GUCCAUC-UCGGG---------UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 150433 0.67 0.906935
Target:  5'- cGCGUG-CAGG-AGAGCgCGCCcGGGg -3'
miRNA:   3'- cCGCGCuGUCCaUCUCGgGUGGuUCU- -5'
14029 3' -56.6 NC_003521.1 + 151276 0.67 0.906935
Target:  5'- aGCGCGACGaGUGG-GCCCGCagccuGGGu -3'
miRNA:   3'- cCGCGCUGUcCAUCuCGGGUGgu---UCU- -5'
14029 3' -56.6 NC_003521.1 + 40805 0.67 0.905143
Target:  5'- cGGCGCGGucagcuauucgccuCGGGgcGGGGCCCgcGCCAuGGAc -3'
miRNA:   3'- -CCGCGCU--------------GUCCa-UCUCGGG--UGGU-UCU- -5'
14029 3' -56.6 NC_003521.1 + 48603 0.68 0.900887
Target:  5'- cGGCGC--CGGGUcgcaagaaacAGGGUCCGCCGAcGAa -3'
miRNA:   3'- -CCGCGcuGUCCA----------UCUCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 46390 0.68 0.900887
Target:  5'- gGGCGCGGgGuGcGUGGGGCgCgcggGCCAGGAa -3'
miRNA:   3'- -CCGCGCUgU-C-CAUCUCGgG----UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 119792 0.68 0.900887
Target:  5'- aGCgGCGACgAGGUc-GGCgCCGCCGAGGa -3'
miRNA:   3'- cCG-CGCUG-UCCAucUCG-GGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 72784 0.68 0.900887
Target:  5'- gGGCGUcuaccaGAUguGGGUcucGGGCgCCACCAAGAa -3'
miRNA:   3'- -CCGCG------CUG--UCCAu--CUCG-GGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 154028 0.68 0.900887
Target:  5'- cGGuCGCGguacguACGcGGUGGuGCCCAUgGAGAu -3'
miRNA:   3'- -CC-GCGC------UGU-CCAUCuCGGGUGgUUCU- -5'
14029 3' -56.6 NC_003521.1 + 228448 0.68 0.900887
Target:  5'- cGGCGUGAaagaggccggaGGGUAGcgacucGCCCACCAc-- -3'
miRNA:   3'- -CCGCGCUg----------UCCAUCu-----CGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 207343 0.68 0.894622
Target:  5'- gGGCGCGucccuCGGGUcggcgcGGccGGCCgaCACCGAGAa -3'
miRNA:   3'- -CCGCGCu----GUCCA------UC--UCGG--GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 139795 0.68 0.894622
Target:  5'- uGGaGCuGCAcGGgcGuGCCCGCCAGGAc -3'
miRNA:   3'- -CCgCGcUGU-CCauCuCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 153113 0.68 0.894622
Target:  5'- gGGCGCGcgcgacggcaGCAGGcGGcuuuGGUCCACCAGcGAg -3'
miRNA:   3'- -CCGCGC----------UGUCCaUC----UCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 55642 0.68 0.89076
Target:  5'- gGGCGUcacgcuccACAGGUGcgccaccucgucgucGGGCCCcACCGAGAg -3'
miRNA:   3'- -CCGCGc-------UGUCCAU---------------CUCGGG-UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 104693 0.68 0.888143
Target:  5'- cGGCGCGccACgGGGUAGAGCgccucguaCACCAGu- -3'
miRNA:   3'- -CCGCGC--UG-UCCAUCUCGg-------GUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 197859 0.68 0.888143
Target:  5'- gGGCGcCGGCGGGUcGcGCUCGCUggGc -3'
miRNA:   3'- -CCGC-GCUGUCCAuCuCGGGUGGuuCu -5'
14029 3' -56.6 NC_003521.1 + 42606 0.68 0.887483
Target:  5'- aGCGCGACAgcgugacGGUAcGGgCCGCUggGAa -3'
miRNA:   3'- cCGCGCUGU-------CCAUcUCgGGUGGuuCU- -5'
14029 3' -56.6 NC_003521.1 + 59666 0.68 0.884154
Target:  5'- uGGCGCgccuggaggagcucaGACgccAGGUGGAGCCCuACCu--- -3'
miRNA:   3'- -CCGCG---------------CUG---UCCAUCUCGGG-UGGuucu -5'
14029 3' -56.6 NC_003521.1 + 226117 0.68 0.881453
Target:  5'- cGGCGUGcACAGGUuggcgcGGAuGcCCCACCAc-- -3'
miRNA:   3'- -CCGCGC-UGUCCA------UCU-C-GGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 123534 0.68 0.881453
Target:  5'- gGGCaGCGugAGG-GGAGCCggCACCAcGGc -3'
miRNA:   3'- -CCG-CGCugUCCaUCUCGG--GUGGUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.