miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 70568 0.66 0.933858
Target:  5'- cGCGCaGAaagcgcuGGUAGAGCCgguCGCCGAGc -3'
miRNA:   3'- cCGCG-CUgu-----CCAUCUCGG---GUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 34503 0.66 0.933858
Target:  5'- aGCaGCGagcGCAGGUAGcGGCCgCggGCCGAGAc -3'
miRNA:   3'- cCG-CGC---UGUCCAUC-UCGG-G--UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 156908 0.66 0.933374
Target:  5'- gGGgGCGACGGGccGGAGCgggggacuucgcgCCACCcgcAGAu -3'
miRNA:   3'- -CCgCGCUGUCCa-UCUCG-------------GGUGGu--UCU- -5'
14029 3' -56.6 NC_003521.1 + 166217 0.67 0.928919
Target:  5'- uGGCGCGGCGGcG-AGGcgcGCCgGCCGcgGGAc -3'
miRNA:   3'- -CCGCGCUGUC-CaUCU---CGGgUGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 226848 0.67 0.928919
Target:  5'- cGcCGCGcCGGGcAG-GCCCAUCAGGGc -3'
miRNA:   3'- cC-GCGCuGUCCaUCuCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 213022 0.67 0.928919
Target:  5'- uGGCGCc---GGgcGAGCCgGCCGAGc -3'
miRNA:   3'- -CCGCGcuguCCauCUCGGgUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 105481 0.67 0.928919
Target:  5'- cGGCGCGcGCGGGagGGAGgcaaCCCGCCc--- -3'
miRNA:   3'- -CCGCGC-UGUCCa-UCUC----GGGUGGuucu -5'
14029 3' -56.6 NC_003521.1 + 150469 0.67 0.928413
Target:  5'- uGGgGCGGCGagcgccuGGUGGGGCCCuuCAGc- -3'
miRNA:   3'- -CCgCGCUGU-------CCAUCUCGGGugGUUcu -5'
14029 3' -56.6 NC_003521.1 + 216828 0.67 0.923756
Target:  5'- uGGCGCG-CAGGaGGucgcAGCCCGCgGcGGAc -3'
miRNA:   3'- -CCGCGCuGUCCaUC----UCGGGUGgU-UCU- -5'
14029 3' -56.6 NC_003521.1 + 101483 0.67 0.923756
Target:  5'- uGGCGCGugAGGUGcucGAGCagcggCgGCCAGa- -3'
miRNA:   3'- -CCGCGCugUCCAU---CUCG-----GgUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 223931 0.67 0.923756
Target:  5'- aGGCGCGGCcgaggGGGUcGAGgCgGCCGcggGGAa -3'
miRNA:   3'- -CCGCGCUG-----UCCAuCUCgGgUGGU---UCU- -5'
14029 3' -56.6 NC_003521.1 + 19478 0.67 0.923756
Target:  5'- uGCGCGGcCAGGUgcaGGuGGCCCGCUcGGu -3'
miRNA:   3'- cCGCGCU-GUCCA---UC-UCGGGUGGuUCu -5'
14029 3' -56.6 NC_003521.1 + 105716 0.67 0.918371
Target:  5'- aGGCgaaGCGGCGGGUGGuGaagaCCACCuuGGu -3'
miRNA:   3'- -CCG---CGCUGUCCAUCuCg---GGUGGuuCU- -5'
14029 3' -56.6 NC_003521.1 + 191260 0.67 0.918371
Target:  5'- cGGCccacGCGGCAGGUGGuGCUCuucaugacgcCCAAGu -3'
miRNA:   3'- -CCG----CGCUGUCCAUCuCGGGu---------GGUUCu -5'
14029 3' -56.6 NC_003521.1 + 84759 0.67 0.918371
Target:  5'- gGGCGCGGCGGcGgcGAcguuguugGCaCCGCCGAa- -3'
miRNA:   3'- -CCGCGCUGUC-CauCU--------CG-GGUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 223208 0.67 0.917267
Target:  5'- cGCGuCGgggucguauugacGCAGGUAGAGCCCcugcagcAgCGAGAg -3'
miRNA:   3'- cCGC-GC-------------UGUCCAUCUCGGG-------UgGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 103059 0.67 0.906935
Target:  5'- gGGCGUGAC-GGaAGAGCUC-CCAGa- -3'
miRNA:   3'- -CCGCGCUGuCCaUCUCGGGuGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 150433 0.67 0.906935
Target:  5'- cGCGUG-CAGG-AGAGCgCGCCcGGGg -3'
miRNA:   3'- cCGCGCuGUCCaUCUCGgGUGGuUCU- -5'
14029 3' -56.6 NC_003521.1 + 101584 0.67 0.906935
Target:  5'- cGCGCGAggagccccguaCAGGUGGuAGCUCaggacgucgGCCAGGGc -3'
miRNA:   3'- cCGCGCU-----------GUCCAUC-UCGGG---------UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 52295 0.67 0.906935
Target:  5'- uGGUgaugGCGAC--GUGGGGCCCGCCGGc- -3'
miRNA:   3'- -CCG----CGCUGucCAUCUCGGGUGGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.