miRNA display CGI


Results 21 - 40 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 102461 0.66 0.947345
Target:  5'- cGGCGCaGCAGGauGAGCUgGCaUAGGAu -3'
miRNA:   3'- -CCGCGcUGUCCauCUCGGgUG-GUUCU- -5'
14029 3' -56.6 NC_003521.1 + 125314 0.66 0.947345
Target:  5'- cGGaCGCGGC-GGUGGGuCCgGCCAcAGAg -3'
miRNA:   3'- -CC-GCGCUGuCCAUCUcGGgUGGU-UCU- -5'
14029 3' -56.6 NC_003521.1 + 136782 0.66 0.946085
Target:  5'- uGCGCGACAGc-GGGcucacggucacgcuGCCCGCCGAcGAc -3'
miRNA:   3'- cCGCGCUGUCcaUCU--------------CGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 17172 0.66 0.945661
Target:  5'- aGGCGCagcgcuggcagcugGGCAGGcgcaucgUGGAcGCCUACCAgacGGAg -3'
miRNA:   3'- -CCGCG--------------CUGUCC-------AUCU-CGGGUGGU---UCU- -5'
14029 3' -56.6 NC_003521.1 + 159670 0.66 0.94307
Target:  5'- cGGCGC-ACccugAGGUcuucaaGGAGCUCAgCAAGAu -3'
miRNA:   3'- -CCGCGcUG----UCCA------UCUCGGGUgGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 179890 0.66 0.94307
Target:  5'- aGCGUcaugaGACGuGGU-GAGCCCACCGu-- -3'
miRNA:   3'- cCGCG-----CUGU-CCAuCUCGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 238468 0.66 0.94307
Target:  5'- cGGCG-GGCGGGgcggAGAcgcgGCCCAgggucagcagccCCAGGAg -3'
miRNA:   3'- -CCGCgCUGUCCa---UCU----CGGGU------------GGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 216379 0.66 0.94307
Target:  5'- cGCGCgGACcuGUuccGAGCCCGCCGGc- -3'
miRNA:   3'- cCGCG-CUGucCAu--CUCGGGUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 38240 0.66 0.94307
Target:  5'- cGGCG-GGCGGGgcggAGAcgcgGCCCAgggucagcagccCCAGGAg -3'
miRNA:   3'- -CCGCgCUGUCCa---UCU----CGGGU------------GGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 106717 0.66 0.94307
Target:  5'- aGGCGCG-CAGGac--GgCCACCAGGu -3'
miRNA:   3'- -CCGCGCuGUCCaucuCgGGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 103495 0.66 0.94307
Target:  5'- cGCGCuGGCgaaAGGgcGAGCCCAgCAgcAGGc -3'
miRNA:   3'- cCGCG-CUG---UCCauCUCGGGUgGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 216239 0.66 0.94307
Target:  5'- aGGCcuacgaGCGGgAGGUggacgaGGAGgCCGCCGAGu -3'
miRNA:   3'- -CCG------CGCUgUCCA------UCUCgGGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 150507 0.66 0.94307
Target:  5'- cGGCGcCGGCGGG----GCCCuGCUAGGAg -3'
miRNA:   3'- -CCGC-GCUGUCCaucuCGGG-UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 212684 0.66 0.94263
Target:  5'- gGGCaGCGuaucccGCAGGUAGAccuuuucGaUCCGCCAGGGu -3'
miRNA:   3'- -CCG-CGC------UGUCCAUCU-------C-GGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 105672 0.66 0.94263
Target:  5'- cGGCaCGAUcaguugcccgaugGGGUGGcuGCCCACCAgcAGGu -3'
miRNA:   3'- -CCGcGCUG-------------UCCAUCu-CGGGUGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 86891 0.66 0.938574
Target:  5'- cGGCGCGGCGGGUGGccgaggaguggaAGCUgCACgCGGc- -3'
miRNA:   3'- -CCGCGCUGUCCAUC------------UCGG-GUG-GUUcu -5'
14029 3' -56.6 NC_003521.1 + 109158 0.66 0.938574
Target:  5'- cGUGCaGGC-GGUAGAcGCCCAgCGAGu -3'
miRNA:   3'- cCGCG-CUGuCCAUCU-CGGGUgGUUCu -5'
14029 3' -56.6 NC_003521.1 + 129310 0.66 0.938574
Target:  5'- aGCgGCGGCGGGaAGAggucGCCCAgCAGGc -3'
miRNA:   3'- cCG-CGCUGUCCaUCU----CGGGUgGUUCu -5'
14029 3' -56.6 NC_003521.1 + 87172 0.66 0.938574
Target:  5'- cGCGCGGCcGuGcAGcGCuCCACCGAGAc -3'
miRNA:   3'- cCGCGCUGuC-CaUCuCG-GGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 127829 0.66 0.938574
Target:  5'- aGGUGCccGGguGGUAGuggcGCCCGCCGcuGAg -3'
miRNA:   3'- -CCGCG--CUguCCAUCu---CGGGUGGUu-CU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.