miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 238468 0.66 0.94307
Target:  5'- cGGCG-GGCGGGgcggAGAcgcgGCCCAgggucagcagccCCAGGAg -3'
miRNA:   3'- -CCGCgCUGUCCa---UCU----CGGGU------------GGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 216239 0.66 0.94307
Target:  5'- aGGCcuacgaGCGGgAGGUggacgaGGAGgCCGCCGAGu -3'
miRNA:   3'- -CCG------CGCUgUCCA------UCUCgGGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 17172 0.66 0.945661
Target:  5'- aGGCGCagcgcuggcagcugGGCAGGcgcaucgUGGAcGCCUACCAgacGGAg -3'
miRNA:   3'- -CCGCG--------------CUGUCC-------AUCU-CGGGUGGU---UCU- -5'
14029 3' -56.6 NC_003521.1 + 203450 0.66 0.951402
Target:  5'- cGUGCGGaAGGUu--GgCCACCAAGAa -3'
miRNA:   3'- cCGCGCUgUCCAucuCgGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 109158 0.66 0.938574
Target:  5'- cGUGCaGGC-GGUAGAcGCCCAgCGAGu -3'
miRNA:   3'- cCGCG-CUGuCCAUCU-CGGGUgGUUCu -5'
14029 3' -56.6 NC_003521.1 + 110070 0.66 0.951402
Target:  5'- cGGCGCGGCGcuc-GcGCCCGCCGAc- -3'
miRNA:   3'- -CCGCGCUGUccauCuCGGGUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 129310 0.66 0.938574
Target:  5'- aGCgGCGGCGGGaAGAggucGCCCAgCAGGc -3'
miRNA:   3'- cCG-CGCUGUCCaUCU----CGGGUgGUUCu -5'
14029 3' -56.6 NC_003521.1 + 86891 0.66 0.938574
Target:  5'- cGGCGCGGCGGGUGGccgaggaguggaAGCUgCACgCGGc- -3'
miRNA:   3'- -CCGCGCUGUCCAUC------------UCGG-GUG-GUUcu -5'
14029 3' -56.6 NC_003521.1 + 179890 0.66 0.94307
Target:  5'- aGCGUcaugaGACGuGGU-GAGCCCACCGu-- -3'
miRNA:   3'- cCGCG-----CUGU-CCAuCUCGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 151815 0.66 0.947345
Target:  5'- uGGCGCc---GGUGGGGCCCGCg---- -3'
miRNA:   3'- -CCGCGcuguCCAUCUCGGGUGguucu -5'
14029 3' -56.6 NC_003521.1 + 38240 0.66 0.94307
Target:  5'- cGGCG-GGCGGGgcggAGAcgcgGCCCAgggucagcagccCCAGGAg -3'
miRNA:   3'- -CCGCgCUGUCCa---UCU----CGGGU------------GGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 53181 0.66 0.951402
Target:  5'- aGGUcgGCGACGccgucGGUGaacccuccgguGAGCUCGCCGGGGa -3'
miRNA:   3'- -CCG--CGCUGU-----CCAU-----------CUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 150507 0.66 0.94307
Target:  5'- cGGCGcCGGCGGG----GCCCuGCUAGGAg -3'
miRNA:   3'- -CCGC-GCUGUCCaucuCGGG-UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 103495 0.66 0.94307
Target:  5'- cGCGCuGGCgaaAGGgcGAGCCCAgCAgcAGGc -3'
miRNA:   3'- cCGCG-CUG---UCCauCUCGGGUgGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 102461 0.66 0.947345
Target:  5'- cGGCGCaGCAGGauGAGCUgGCaUAGGAu -3'
miRNA:   3'- -CCGCGcUGUCCauCUCGGgUG-GUUCU- -5'
14029 3' -56.6 NC_003521.1 + 106717 0.66 0.94307
Target:  5'- aGGCGCG-CAGGac--GgCCACCAGGu -3'
miRNA:   3'- -CCGCGCuGUCCaucuCgGGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 212684 0.66 0.94263
Target:  5'- gGGCaGCGuaucccGCAGGUAGAccuuuucGaUCCGCCAGGGu -3'
miRNA:   3'- -CCG-CGC------UGUCCAUCU-------C-GGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 105672 0.66 0.94263
Target:  5'- cGGCaCGAUcaguugcccgaugGGGUGGcuGCCCACCAgcAGGu -3'
miRNA:   3'- -CCGcGCUG-------------UCCAUCu-CGGGUGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 70568 0.66 0.933858
Target:  5'- cGCGCaGAaagcgcuGGUAGAGCCgguCGCCGAGc -3'
miRNA:   3'- cCGCG-CUgu-----CCAUCUCGG---GUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 34503 0.66 0.933858
Target:  5'- aGCaGCGagcGCAGGUAGcGGCCgCggGCCGAGAc -3'
miRNA:   3'- cCG-CGC---UGUCCAUC-UCGG-G--UGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.