Results 21 - 40 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14029 | 3' | -56.6 | NC_003521.1 | + | 38288 | 0.71 | 0.721888 |
Target: 5'- cGGCGCGcaGCAGGUgcgAGAGCUCgucgGCCAgcGGGu -3' miRNA: 3'- -CCGCGC--UGUCCA---UCUCGGG----UGGU--UCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 196956 | 0.71 | 0.721888 |
Target: 5'- uGgGCGACGGcccgGGAGCCgGCCGGGGc -3' miRNA: 3'- cCgCGCUGUCca--UCUCGGgUGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 218095 | 0.71 | 0.721888 |
Target: 5'- cGGCGCcggugacgauGAgGGcGUAGAGCCCGCUGuAGAu -3' miRNA: 3'- -CCGCG----------CUgUC-CAUCUCGGGUGGU-UCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 180899 | 0.71 | 0.721888 |
Target: 5'- --aGCGAgAGGUgGGAGCCCACCu--- -3' miRNA: 3'- ccgCGCUgUCCA-UCUCGGGUGGuucu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 136146 | 0.71 | 0.731415 |
Target: 5'- uGGCGCGccgccaccACcuGcUGGAGCCCAUCGAGGa -3' miRNA: 3'- -CCGCGC--------UGucC-AUCUCGGGUGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 58851 | 0.71 | 0.740862 |
Target: 5'- uGGCGCGgaugcccaGCAGGUAaaGGCCCAC-GAGAg -3' miRNA: 3'- -CCGCGC--------UGUCCAUc-UCGGGUGgUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 19652 | 0.71 | 0.750221 |
Target: 5'- aGGCGUuauauagacGGCAGGUGGcGCCagagACCGAGGa -3' miRNA: 3'- -CCGCG---------CUGUCCAUCuCGGg---UGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 157055 | 0.71 | 0.750221 |
Target: 5'- aGCGCGGCGGG--GGGCgCCGCCAc-- -3' miRNA: 3'- cCGCGCUGUCCauCUCG-GGUGGUucu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 28863 | 0.71 | 0.750221 |
Target: 5'- cGGCGCGGCAcGGUcGAGUCgC-CCAAGc -3' miRNA: 3'- -CCGCGCUGU-CCAuCUCGG-GuGGUUCu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 92018 | 0.71 | 0.759483 |
Target: 5'- aGGCGCGGCggcggcggcgguGGGUccgGGGGUCC-CCGGGGu -3' miRNA: 3'- -CCGCGCUG------------UCCA---UCUCGGGuGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 47412 | 0.71 | 0.759483 |
Target: 5'- aGGC-CGGC-GGUAGgagcaaauccaAGUCCACCGAGAa -3' miRNA: 3'- -CCGcGCUGuCCAUC-----------UCGGGUGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 124498 | 0.71 | 0.76864 |
Target: 5'- aGCGCGugAGGaAGccGCCCACguAGAc -3' miRNA: 3'- cCGCGCugUCCaUCu-CGGGUGguUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 18279 | 0.71 | 0.76864 |
Target: 5'- -cCGCGACGGG-AGGGCCCGCa---- -3' miRNA: 3'- ccGCGCUGUCCaUCUCGGGUGguucu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 76194 | 0.71 | 0.76864 |
Target: 5'- aGGCGCcACAGGaUGGgccagaAGCCCGCCGGc- -3' miRNA: 3'- -CCGCGcUGUCC-AUC------UCGGGUGGUUcu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 100226 | 0.7 | 0.777683 |
Target: 5'- aGGC-CGGCgAGGUGGAGCUgGgCGAGGu -3' miRNA: 3'- -CCGcGCUG-UCCAUCUCGGgUgGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 32113 | 0.7 | 0.785719 |
Target: 5'- cGGCGCGgcugaucucggGCAGGUAGcgggcgcGGUgCACCAAGc -3' miRNA: 3'- -CCGCGC-----------UGUCCAUC-------UCGgGUGGUUCu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 97845 | 0.7 | 0.786605 |
Target: 5'- cGGUGCGACagagagGGGUGcGGGCCagggagACCAGGGg -3' miRNA: 3'- -CCGCGCUG------UCCAU-CUCGGg-----UGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 102351 | 0.7 | 0.794524 |
Target: 5'- cGgGCGGCAGGUGGcagauguGGCgCCGCCGGcGAu -3' miRNA: 3'- cCgCGCUGUCCAUC-------UCG-GGUGGUU-CU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 59565 | 0.7 | 0.795397 |
Target: 5'- cGGCGCcGCGGGgguuucguccgAGaAGCgCGCCAAGAa -3' miRNA: 3'- -CCGCGcUGUCCa----------UC-UCGgGUGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 218042 | 0.7 | 0.812561 |
Target: 5'- cGGCgGCGuccGCAGGUAGAugagGUCCACCGu-- -3' miRNA: 3'- -CCG-CGC---UGUCCAUCU----CGGGUGGUucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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