miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 170913 1.11 0.003189
Target:  5'- aGGCGCGACAGGUAGAGCCCACCAAGAu -3'
miRNA:   3'- -CCGCGCUGUCCAUCUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 127847 0.8 0.303629
Target:  5'- cGGCGCcagcccgucgGGCAGGUu--GCCCACCAGGAu -3'
miRNA:   3'- -CCGCG----------CUGUCCAucuCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 181126 0.79 0.324469
Target:  5'- cGGCGCGGCaguugAGGUAGGGCuCCACCuGGc -3'
miRNA:   3'- -CCGCGCUG-----UCCAUCUCG-GGUGGuUCu -5'
14029 3' -56.6 NC_003521.1 + 68760 0.75 0.498283
Target:  5'- cGUGgGGCAGuucgaGGAGCCCGCCGAGAc -3'
miRNA:   3'- cCGCgCUGUCca---UCUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 180190 0.75 0.516089
Target:  5'- gGGCuuGCGACAGGagacgUAGAGCacgcagaaggccaCCACCAGGAa -3'
miRNA:   3'- -CCG--CGCUGUCC-----AUCUCG-------------GGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 229627 0.74 0.555322
Target:  5'- aGGCGCGACggcucugaagacAGGUGcuGCCuCACCGGGAu -3'
miRNA:   3'- -CCGCGCUG------------UCCAUcuCGG-GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 167909 0.74 0.584573
Target:  5'- --aGCGGCAGGUGGGGCgCCGCgauCGAGGg -3'
miRNA:   3'- ccgCGCUGUCCAUCUCG-GGUG---GUUCU- -5'
14029 3' -56.6 NC_003521.1 + 111252 0.74 0.604244
Target:  5'- cGGCGCGGCGGagcagccaucGUcGGGCCCGCCGu-- -3'
miRNA:   3'- -CCGCGCUGUC----------CAuCUCGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 238516 0.73 0.614112
Target:  5'- cGGCGCGAgCAGGUgcgAGAGCUCgucgGCCAgcGGGu -3'
miRNA:   3'- -CCGCGCU-GUCCA---UCUCGGG----UGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 145488 0.73 0.623992
Target:  5'- -aCGCuGCAGGUGGAGCCCugCGc-- -3'
miRNA:   3'- ccGCGcUGUCCAUCUCGGGugGUucu -5'
14029 3' -56.6 NC_003521.1 + 150781 0.73 0.653639
Target:  5'- cGCGCGACGacGGgcGGGCgcgagCCGCCAGGGg -3'
miRNA:   3'- cCGCGCUGU--CCauCUCG-----GGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 162881 0.72 0.663499
Target:  5'- gGGCGCGcGCAGGUGG-GCcgcuacugCCugCAGGAc -3'
miRNA:   3'- -CCGCGC-UGUCCAUCuCG--------GGugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 196403 0.72 0.663499
Target:  5'- gGGCgGCGGCAGGUAGAGCaggUugUAGGc -3'
miRNA:   3'- -CCG-CGCUGUCCAUCUCGg--GugGUUCu -5'
14029 3' -56.6 NC_003521.1 + 182068 0.72 0.673335
Target:  5'- --gGCGugGGGUAcGGGCCaGCCGAGAa -3'
miRNA:   3'- ccgCGCugUCCAU-CUCGGgUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 30795 0.72 0.673335
Target:  5'- gGGCGCGGUAGcGcaccgAGGGCCCGCCGGcGAa -3'
miRNA:   3'- -CCGCGCUGUC-Ca----UCUCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 119460 0.72 0.673335
Target:  5'- aGGCGCGACAGuGUGaAGCCgCGCgGGGc -3'
miRNA:   3'- -CCGCGCUGUC-CAUcUCGG-GUGgUUCu -5'
14029 3' -56.6 NC_003521.1 + 34101 0.72 0.683141
Target:  5'- cGCGCGAUAGG---AGCCCGCCGc-- -3'
miRNA:   3'- cCGCGCUGUCCaucUCGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 135299 0.72 0.692906
Target:  5'- gGGCGCGACA--UGGAGCCa--CAGGAa -3'
miRNA:   3'- -CCGCGCUGUccAUCUCGGgugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 188026 0.72 0.712288
Target:  5'- aGGCG-GucCAGGUGGAGCCgCACCGc-- -3'
miRNA:   3'- -CCGCgCu-GUCCAUCUCGG-GUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 133851 0.72 0.713251
Target:  5'- aGGCGcCGAcCAGGauaaagagauugaugAGAGUCCACCAGGc -3'
miRNA:   3'- -CCGC-GCU-GUCCa--------------UCUCGGGUGGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.