miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 4218 0.66 0.955245
Target:  5'- gGGCGgGAaGGGUgucGGAGCCCcgaggcuggcuGCCGugAGAu -3'
miRNA:   3'- -CCGCgCUgUCCA---UCUCGGG-----------UGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 7807 0.69 0.844998
Target:  5'- cGGCGUGuCGGGgugcAGAacGCCUACCgAAGAc -3'
miRNA:   3'- -CCGCGCuGUCCa---UCU--CGGGUGG-UUCU- -5'
14029 3' -56.6 NC_003521.1 + 14743 0.69 0.844998
Target:  5'- gGGCGUGACGGGcc-GGCCgCgGCCGGGGc -3'
miRNA:   3'- -CCGCGCUGUCCaucUCGG-G-UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 17172 0.66 0.945661
Target:  5'- aGGCGCagcgcuggcagcugGGCAGGcgcaucgUGGAcGCCUACCAgacGGAg -3'
miRNA:   3'- -CCGCG--------------CUGUCC-------AUCU-CGGGUGGU---UCU- -5'
14029 3' -56.6 NC_003521.1 + 18279 0.71 0.76864
Target:  5'- -cCGCGACGGG-AGGGCCCGCa---- -3'
miRNA:   3'- ccGCGCUGUCCaUCUCGGGUGguucu -5'
14029 3' -56.6 NC_003521.1 + 18996 0.69 0.852673
Target:  5'- cGCGCGACgAGGgAGAcacGCCCGCCc--- -3'
miRNA:   3'- cCGCGCUG-UCCaUCU---CGGGUGGuucu -5'
14029 3' -56.6 NC_003521.1 + 19478 0.67 0.923756
Target:  5'- uGCGCGGcCAGGUgcaGGuGGCCCGCUcGGu -3'
miRNA:   3'- cCGCGCU-GUCCA---UC-UCGGGUGGuUCu -5'
14029 3' -56.6 NC_003521.1 + 19652 0.71 0.750221
Target:  5'- aGGCGUuauauagacGGCAGGUGGcGCCagagACCGAGGa -3'
miRNA:   3'- -CCGCG---------CUGUCCAUCuCGGg---UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 28863 0.71 0.750221
Target:  5'- cGGCGCGGCAcGGUcGAGUCgC-CCAAGc -3'
miRNA:   3'- -CCGCGCUGU-CCAuCUCGG-GuGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 30795 0.72 0.673335
Target:  5'- gGGCGCGGUAGcGcaccgAGGGCCCGCCGGcGAa -3'
miRNA:   3'- -CCGCGCUGUC-Ca----UCUCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 30972 0.68 0.867458
Target:  5'- cGGCGCuACgAGGUAGAGCugCCGCaaguGGAc -3'
miRNA:   3'- -CCGCGcUG-UCCAUCUCG--GGUGgu--UCU- -5'
14029 3' -56.6 NC_003521.1 + 31873 0.66 0.947345
Target:  5'- cGGUGCGAgcGGUAccGCaCCGCCAGGc -3'
miRNA:   3'- -CCGCGCUguCCAUcuCG-GGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 32113 0.7 0.785719
Target:  5'- cGGCGCGgcugaucucggGCAGGUAGcgggcgcGGUgCACCAAGc -3'
miRNA:   3'- -CCGCGC-----------UGUCCAUC-------UCGgGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 34101 0.72 0.683141
Target:  5'- cGCGCGAUAGG---AGCCCGCCGc-- -3'
miRNA:   3'- cCGCGCUGUCCaucUCGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 34503 0.66 0.933858
Target:  5'- aGCaGCGagcGCAGGUAGcGGCCgCggGCCGAGAc -3'
miRNA:   3'- cCG-CGC---UGUCCAUC-UCGG-G--UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 36702 0.69 0.837143
Target:  5'- cGGCGCcuggcccgaGCAGGUGGAggcgcagugGCgCCACCAGGu -3'
miRNA:   3'- -CCGCGc--------UGUCCAUCU---------CG-GGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 38240 0.66 0.94307
Target:  5'- cGGCG-GGCGGGgcggAGAcgcgGCCCAgggucagcagccCCAGGAg -3'
miRNA:   3'- -CCGCgCUGUCCa---UCU----CGGGU------------GGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 38288 0.71 0.721888
Target:  5'- cGGCGCGcaGCAGGUgcgAGAGCUCgucgGCCAgcGGGu -3'
miRNA:   3'- -CCGCGC--UGUCCA---UCUCGGG----UGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 39395 0.66 0.947345
Target:  5'- aGGCGgGGCGauGuUGGAGCCgaguuugggCGCCGAGAa -3'
miRNA:   3'- -CCGCgCUGU--CcAUCUCGG---------GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 40805 0.67 0.905143
Target:  5'- cGGCGCGGucagcuauucgccuCGGGgcGGGGCCCgcGCCAuGGAc -3'
miRNA:   3'- -CCGCGCU--------------GUCCa-UCUCGGG--UGGU-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.