miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 218042 0.7 0.812561
Target:  5'- cGGCgGCGuccGCAGGUAGAugagGUCCACCGu-- -3'
miRNA:   3'- -CCG-CGC---UGUCCAUCU----CGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 19652 0.71 0.750221
Target:  5'- aGGCGUuauauagacGGCAGGUGGcGCCagagACCGAGGa -3'
miRNA:   3'- -CCGCG---------CUGUCCAUCuCGGg---UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 28863 0.71 0.750221
Target:  5'- cGGCGCGGCAcGGUcGAGUCgC-CCAAGc -3'
miRNA:   3'- -CCGCGCUGU-CCAuCUCGG-GuGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 92018 0.71 0.759483
Target:  5'- aGGCGCGGCggcggcggcgguGGGUccgGGGGUCC-CCGGGGu -3'
miRNA:   3'- -CCGCGCUG------------UCCA---UCUCGGGuGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 76194 0.71 0.76864
Target:  5'- aGGCGCcACAGGaUGGgccagaAGCCCGCCGGc- -3'
miRNA:   3'- -CCGCGcUGUCC-AUC------UCGGGUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 18279 0.71 0.76864
Target:  5'- -cCGCGACGGG-AGGGCCCGCa---- -3'
miRNA:   3'- ccGCGCUGUCCaUCUCGGGUGguucu -5'
14029 3' -56.6 NC_003521.1 + 100226 0.7 0.777683
Target:  5'- aGGC-CGGCgAGGUGGAGCUgGgCGAGGu -3'
miRNA:   3'- -CCGcGCUG-UCCAUCUCGGgUgGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 32113 0.7 0.785719
Target:  5'- cGGCGCGgcugaucucggGCAGGUAGcgggcgcGGUgCACCAAGc -3'
miRNA:   3'- -CCGCGC-----------UGUCCAUC-------UCGgGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 59565 0.7 0.795397
Target:  5'- cGGCGCcGCGGGgguuucguccgAGaAGCgCGCCAAGAa -3'
miRNA:   3'- -CCGCGcUGUCCa----------UC-UCGgGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 58851 0.71 0.740862
Target:  5'- uGGCGCGgaugcccaGCAGGUAaaGGCCCAC-GAGAg -3'
miRNA:   3'- -CCGCGC--------UGUCCAUc-UCGGGUGgUUCU- -5'
14029 3' -56.6 NC_003521.1 + 136146 0.71 0.731415
Target:  5'- uGGCGCGccgccaccACcuGcUGGAGCCCAUCGAGGa -3'
miRNA:   3'- -CCGCGC--------UGucC-AUCUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 218095 0.71 0.721888
Target:  5'- cGGCGCcggugacgauGAgGGcGUAGAGCCCGCUGuAGAu -3'
miRNA:   3'- -CCGCG----------CUgUC-CAUCUCGGGUGGU-UCU- -5'
14029 3' -56.6 NC_003521.1 + 180190 0.75 0.516089
Target:  5'- gGGCuuGCGACAGGagacgUAGAGCacgcagaaggccaCCACCAGGAa -3'
miRNA:   3'- -CCG--CGCUGUCC-----AUCUCG-------------GGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 167909 0.74 0.584573
Target:  5'- --aGCGGCAGGUGGGGCgCCGCgauCGAGGg -3'
miRNA:   3'- ccgCGCUGUCCAUCUCG-GGUG---GUUCU- -5'
14029 3' -56.6 NC_003521.1 + 238516 0.73 0.614112
Target:  5'- cGGCGCGAgCAGGUgcgAGAGCUCgucgGCCAgcGGGu -3'
miRNA:   3'- -CCGCGCU-GUCCA---UCUCGGG----UGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 145488 0.73 0.623992
Target:  5'- -aCGCuGCAGGUGGAGCCCugCGc-- -3'
miRNA:   3'- ccGCGcUGUCCAUCUCGGGugGUucu -5'
14029 3' -56.6 NC_003521.1 + 182068 0.72 0.673335
Target:  5'- --gGCGugGGGUAcGGGCCaGCCGAGAa -3'
miRNA:   3'- ccgCGCugUCCAU-CUCGGgUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 30795 0.72 0.673335
Target:  5'- gGGCGCGGUAGcGcaccgAGGGCCCGCCGGcGAa -3'
miRNA:   3'- -CCGCGCUGUC-Ca----UCUCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 119460 0.72 0.673335
Target:  5'- aGGCGCGACAGuGUGaAGCCgCGCgGGGc -3'
miRNA:   3'- -CCGCGCUGUC-CAUcUCGG-GUGgUUCu -5'
14029 3' -56.6 NC_003521.1 + 180899 0.71 0.721888
Target:  5'- --aGCGAgAGGUgGGAGCCCACCu--- -3'
miRNA:   3'- ccgCGCUgUCCA-UCUCGGGUGGuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.