miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 170913 1.11 0.003189
Target:  5'- aGGCGCGACAGGUAGAGCCCACCAAGAu -3'
miRNA:   3'- -CCGCGCUGUCCAUCUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 97845 0.7 0.786605
Target:  5'- cGGUGCGACagagagGGGUGcGGGCCagggagACCAGGGg -3'
miRNA:   3'- -CCGCGCUG------UCCAU-CUCGGg-----UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 98546 0.69 0.820917
Target:  5'- aGCgGCGGCGGGUcccagcccGAGCCCgagucgGCCGAGGa -3'
miRNA:   3'- cCG-CGCUGUCCAu-------CUCGGG------UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 191810 0.66 0.955245
Target:  5'- cGGCGUGACu-GUAcugcccccuacGAcGCCCugCGAGAu -3'
miRNA:   3'- -CCGCGCUGucCAU-----------CU-CGGGugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 111252 0.74 0.604244
Target:  5'- cGGCGCGGCGGagcagccaucGUcGGGCCCGCCGu-- -3'
miRNA:   3'- -CCGCGCUGUC----------CAuCUCGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 150781 0.73 0.653639
Target:  5'- cGCGCGACGacGGgcGGGCgcgagCCGCCAGGGg -3'
miRNA:   3'- cCGCGCUGU--CCauCUCG-----GGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 196403 0.72 0.663499
Target:  5'- gGGCgGCGGCAGGUAGAGCaggUugUAGGc -3'
miRNA:   3'- -CCG-CGCUGUCCAUCUCGg--GugGUUCu -5'
14029 3' -56.6 NC_003521.1 + 34101 0.72 0.683141
Target:  5'- cGCGCGAUAGG---AGCCCGCCGc-- -3'
miRNA:   3'- cCGCGCUGUCCaucUCGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 133851 0.72 0.713251
Target:  5'- aGGCGcCGAcCAGGauaaagagauugaugAGAGUCCACCAGGc -3'
miRNA:   3'- -CCGC-GCU-GUCCa--------------UCUCGGGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 124498 0.71 0.76864
Target:  5'- aGCGCGugAGGaAGccGCCCACguAGAc -3'
miRNA:   3'- cCGCGCugUCCaUCu-CGGGUGguUCU- -5'
14029 3' -56.6 NC_003521.1 + 196956 0.71 0.721888
Target:  5'- uGgGCGACGGcccgGGAGCCgGCCGGGGc -3'
miRNA:   3'- cCgCGCUGUCca--UCUCGGgUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 188026 0.72 0.712288
Target:  5'- aGGCG-GucCAGGUGGAGCCgCACCGc-- -3'
miRNA:   3'- -CCGCgCu-GUCCAUCUCGG-GUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 181126 0.79 0.324469
Target:  5'- cGGCGCGGCaguugAGGUAGGGCuCCACCuGGc -3'
miRNA:   3'- -CCGCGCUG-----UCCAUCUCG-GGUGGuUCu -5'
14029 3' -56.6 NC_003521.1 + 157055 0.71 0.750221
Target:  5'- aGCGCGGCGGG--GGGCgCCGCCAc-- -3'
miRNA:   3'- cCGCGCUGUCCauCUCG-GGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 68760 0.75 0.498283
Target:  5'- cGUGgGGCAGuucgaGGAGCCCGCCGAGAc -3'
miRNA:   3'- cCGCgCUGUCca---UCUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 135299 0.72 0.692906
Target:  5'- gGGCGCGACA--UGGAGCCa--CAGGAa -3'
miRNA:   3'- -CCGCGCUGUccAUCUCGGgugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 47412 0.71 0.759483
Target:  5'- aGGC-CGGC-GGUAGgagcaaauccaAGUCCACCGAGAa -3'
miRNA:   3'- -CCGcGCUGuCCAUC-----------UCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 102351 0.7 0.794524
Target:  5'- cGgGCGGCAGGUGGcagauguGGCgCCGCCGGcGAu -3'
miRNA:   3'- cCgCGCUGUCCAUC-------UCG-GGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 229627 0.74 0.555322
Target:  5'- aGGCGCGACggcucugaagacAGGUGcuGCCuCACCGGGAu -3'
miRNA:   3'- -CCGCGCUG------------UCCAUcuCGG-GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 162881 0.72 0.663499
Target:  5'- gGGCGCGcGCAGGUGG-GCcgcuacugCCugCAGGAc -3'
miRNA:   3'- -CCGCGC-UGUCCAUCuCG--------GGugGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.