miRNA display CGI


Results 1 - 20 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 154295 0.66 0.947345
Target:  5'- cGGgGCGGCAcGGcguccGGGGCCgACgCGGGAa -3'
miRNA:   3'- -CCgCGCUGU-CCa----UCUCGGgUG-GUUCU- -5'
14029 3' -56.6 NC_003521.1 + 216239 0.66 0.94307
Target:  5'- aGGCcuacgaGCGGgAGGUggacgaGGAGgCCGCCGAGu -3'
miRNA:   3'- -CCG------CGCUgUCCA------UCUCgGGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 150507 0.66 0.94307
Target:  5'- cGGCGcCGGCGGG----GCCCuGCUAGGAg -3'
miRNA:   3'- -CCGC-GCUGUCCaucuCGGG-UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 192910 0.66 0.954494
Target:  5'- aGCGCGAaggccguCAGGgccaucaGGAcggcgaaGCCCACUAGGAa -3'
miRNA:   3'- cCGCGCU-------GUCCa------UCU-------CGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 31873 0.66 0.947345
Target:  5'- cGGUGCGAgcGGUAccGCaCCGCCAGGc -3'
miRNA:   3'- -CCGCGCUguCCAUcuCG-GGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 212684 0.66 0.94263
Target:  5'- gGGCaGCGuaucccGCAGGUAGAccuuuucGaUCCGCCAGGGu -3'
miRNA:   3'- -CCG-CGC------UGUCCAUCU-------C-GGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 34503 0.66 0.933858
Target:  5'- aGCaGCGagcGCAGGUAGcGGCCgCggGCCGAGAc -3'
miRNA:   3'- cCG-CGC---UGUCCAUC-UCGG-G--UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 70568 0.66 0.933858
Target:  5'- cGCGCaGAaagcgcuGGUAGAGCCgguCGCCGAGc -3'
miRNA:   3'- cCGCG-CUgu-----CCAUCUCGG---GUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 136782 0.66 0.946085
Target:  5'- uGCGCGACAGc-GGGcucacggucacgcuGCCCGCCGAcGAc -3'
miRNA:   3'- cCGCGCUGUCcaUCU--------------CGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 238468 0.66 0.94307
Target:  5'- cGGCG-GGCGGGgcggAGAcgcgGCCCAgggucagcagccCCAGGAg -3'
miRNA:   3'- -CCGCgCUGUCCa---UCU----CGGGU------------GGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 103495 0.66 0.94307
Target:  5'- cGCGCuGGCgaaAGGgcGAGCCCAgCAgcAGGc -3'
miRNA:   3'- cCGCG-CUG---UCCauCUCGGGUgGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 144973 0.66 0.951402
Target:  5'- uGCGCGACAuccuGAGCCagcggcaugcCACCGAGGc -3'
miRNA:   3'- cCGCGCUGUccauCUCGG----------GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 76257 0.66 0.947345
Target:  5'- aGGCGCGAgAGGcgcacGGCcgCCugCGAGAc -3'
miRNA:   3'- -CCGCGCUgUCCauc--UCG--GGugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 191810 0.66 0.955245
Target:  5'- cGGCGUGACu-GUAcugcccccuacGAcGCCCugCGAGAu -3'
miRNA:   3'- -CCGCGCUGucCAU-----------CU-CGGGugGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 39395 0.66 0.947345
Target:  5'- aGGCGgGGCGauGuUGGAGCCgaguuugggCGCCGAGAa -3'
miRNA:   3'- -CCGCgCUGU--CcAUCUCGG---------GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 128760 0.66 0.951402
Target:  5'- uGGUGUaGguGGUGGGGUUCuCCAGGAu -3'
miRNA:   3'- -CCGCGcUguCCAUCUCGGGuGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 108066 0.66 0.955245
Target:  5'- -aUGUGACGuucauGGUuuuGGGGCCgGCCAGGAu -3'
miRNA:   3'- ccGCGCUGU-----CCA---UCUCGGgUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 42969 0.66 0.947345
Target:  5'- aGCGCGACccGccGGcGCCCACCGAcGAc -3'
miRNA:   3'- cCGCGCUGucCa-UCuCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 125314 0.66 0.947345
Target:  5'- cGGaCGCGGC-GGUGGGuCCgGCCAcAGAg -3'
miRNA:   3'- -CC-GCGCUGuCCAUCUcGGgUGGU-UCU- -5'
14029 3' -56.6 NC_003521.1 + 105672 0.66 0.94263
Target:  5'- cGGCaCGAUcaguugcccgaugGGGUGGcuGCCCACCAgcAGGu -3'
miRNA:   3'- -CCGcGCUG-------------UCCAUCu-CGGGUGGU--UCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.