miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 238516 0.73 0.614112
Target:  5'- cGGCGCGAgCAGGUgcgAGAGCUCgucgGCCAgcGGGu -3'
miRNA:   3'- -CCGCGCU-GUCCA---UCUCGGG----UGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 238468 0.66 0.94307
Target:  5'- cGGCG-GGCGGGgcggAGAcgcgGCCCAgggucagcagccCCAGGAg -3'
miRNA:   3'- -CCGCgCUGUCCa---UCU----CGGGU------------GGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 235605 0.66 0.955245
Target:  5'- aGGCG-GACucGGGcGGAGCCCgACCGc-- -3'
miRNA:   3'- -CCGCgCUG--UCCaUCUCGGG-UGGUucu -5'
14029 3' -56.6 NC_003521.1 + 229627 0.74 0.555322
Target:  5'- aGGCGCGACggcucugaagacAGGUGcuGCCuCACCGGGAu -3'
miRNA:   3'- -CCGCGCUG------------UCCAUcuCGG-GUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 229204 0.68 0.874556
Target:  5'- uGGCGCGuuGGGU-GAGauugcgauaCCCGCCAguGGAc -3'
miRNA:   3'- -CCGCGCugUCCAuCUC---------GGGUGGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 228448 0.68 0.900887
Target:  5'- cGGCGUGAaagaggccggaGGGUAGcgacucGCCCACCAc-- -3'
miRNA:   3'- -CCGCGCUg----------UCCAUCu-----CGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 226848 0.67 0.928919
Target:  5'- cGcCGCGcCGGGcAG-GCCCAUCAGGGc -3'
miRNA:   3'- cC-GCGCuGUCCaUCuCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 226117 0.68 0.881453
Target:  5'- cGGCGUGcACAGGUuggcgcGGAuGcCCCACCAc-- -3'
miRNA:   3'- -CCGCGC-UGUCCA------UCU-C-GGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 223931 0.67 0.923756
Target:  5'- aGGCGCGGCcgaggGGGUcGAGgCgGCCGcggGGAa -3'
miRNA:   3'- -CCGCGCUG-----UCCAuCUCgGgUGGU---UCU- -5'
14029 3' -56.6 NC_003521.1 + 223208 0.67 0.917267
Target:  5'- cGCGuCGgggucguauugacGCAGGUAGAGCCCcugcagcAgCGAGAg -3'
miRNA:   3'- cCGC-GC-------------UGUCCAUCUCGGG-------UgGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 222275 0.68 0.874556
Target:  5'- cGCGCGugAuGGUgcccAGAGCCCcguGCCAGc- -3'
miRNA:   3'- cCGCGCugU-CCA----UCUCGGG---UGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 218095 0.71 0.721888
Target:  5'- cGGCGCcggugacgauGAgGGcGUAGAGCCCGCUGuAGAu -3'
miRNA:   3'- -CCGCG----------CUgUC-CAUCUCGGGUGGU-UCU- -5'
14029 3' -56.6 NC_003521.1 + 218042 0.7 0.812561
Target:  5'- cGGCgGCGuccGCAGGUAGAugagGUCCACCGu-- -3'
miRNA:   3'- -CCG-CGC---UGUCCAUCU----CGGGUGGUucu -5'
14029 3' -56.6 NC_003521.1 + 216828 0.67 0.923756
Target:  5'- uGGCGCG-CAGGaGGucgcAGCCCGCgGcGGAc -3'
miRNA:   3'- -CCGCGCuGUCCaUC----UCGGGUGgU-UCU- -5'
14029 3' -56.6 NC_003521.1 + 216379 0.66 0.94307
Target:  5'- cGCGCgGACcuGUuccGAGCCCGCCGGc- -3'
miRNA:   3'- cCGCG-CUGucCAu--CUCGGGUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 216239 0.66 0.94307
Target:  5'- aGGCcuacgaGCGGgAGGUggacgaGGAGgCCGCCGAGu -3'
miRNA:   3'- -CCG------CGCUgUCCA------UCUCgGGUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 213022 0.67 0.928919
Target:  5'- uGGCGCc---GGgcGAGCCgGCCGAGc -3'
miRNA:   3'- -CCGCGcuguCCauCUCGGgUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 212684 0.66 0.94263
Target:  5'- gGGCaGCGuaucccGCAGGUAGAccuuuucGaUCCGCCAGGGu -3'
miRNA:   3'- -CCG-CGC------UGUCCAUCU-------C-GGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 212231 0.68 0.867458
Target:  5'- aGCGgGugAGGUcGcGCUCGCCGGGGg -3'
miRNA:   3'- cCGCgCugUCCAuCuCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 211727 0.69 0.824216
Target:  5'- uGGUGCGGCGaaaGUGcgccaccaugagcucGAuGCCCACCAGGAa -3'
miRNA:   3'- -CCGCGCUGUc--CAU---------------CU-CGGGUGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.