miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 3' -56.6 NC_003521.1 + 42606 0.68 0.887483
Target:  5'- aGCGCGACAgcgugacGGUAcGGgCCGCUggGAa -3'
miRNA:   3'- cCGCGCUGU-------CCAUcUCgGGUGGuuCU- -5'
14029 3' -56.6 NC_003521.1 + 42969 0.66 0.947345
Target:  5'- aGCGCGACccGccGGcGCCCACCGAcGAc -3'
miRNA:   3'- cCGCGCUGucCa-UCuCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 46390 0.68 0.900887
Target:  5'- gGGCGCGGgGuGcGUGGGGCgCgcggGCCAGGAa -3'
miRNA:   3'- -CCGCGCUgU-C-CAUCUCGgG----UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 47412 0.71 0.759483
Target:  5'- aGGC-CGGC-GGUAGgagcaaauccaAGUCCACCGAGAa -3'
miRNA:   3'- -CCGcGCUGuCCAUC-----------UCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 48603 0.68 0.900887
Target:  5'- cGGCGC--CGGGUcgcaagaaacAGGGUCCGCCGAcGAa -3'
miRNA:   3'- -CCGCGcuGUCCA----------UCUCGGGUGGUU-CU- -5'
14029 3' -56.6 NC_003521.1 + 52295 0.67 0.906935
Target:  5'- uGGUgaugGCGAC--GUGGGGCCCGCCGGc- -3'
miRNA:   3'- -CCG----CGCUGucCAUCUCGGGUGGUUcu -5'
14029 3' -56.6 NC_003521.1 + 53181 0.66 0.951402
Target:  5'- aGGUcgGCGACGccgucGGUGaacccuccgguGAGCUCGCCGGGGa -3'
miRNA:   3'- -CCG--CGCUGU-----CCAU-----------CUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 53204 0.66 0.956723
Target:  5'- cGCGCGgcccggcucgcccugGCAGGccGuGCCCACCGgcagcAGAa -3'
miRNA:   3'- cCGCGC---------------UGUCCauCuCGGGUGGU-----UCU- -5'
14029 3' -56.6 NC_003521.1 + 53355 0.69 0.844998
Target:  5'- cGGCGCGGCGgcGGaGGGGCCgacagACCGAGc -3'
miRNA:   3'- -CCGCGCUGU--CCaUCUCGGg----UGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 55642 0.68 0.89076
Target:  5'- gGGCGUcacgcuccACAGGUGcgccaccucgucgucGGGCCCcACCGAGAg -3'
miRNA:   3'- -CCGCGc-------UGUCCAU---------------CUCGGG-UGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 55836 0.69 0.860161
Target:  5'- aGCGCGGCAGGcc-GGCCUugCAcAGGu -3'
miRNA:   3'- cCGCGCUGUCCaucUCGGGugGU-UCU- -5'
14029 3' -56.6 NC_003521.1 + 56183 0.68 0.867458
Target:  5'- aGCGCGACAGGUugaccaucAGCCgCugCAcgGGAg -3'
miRNA:   3'- cCGCGCUGUCCAuc------UCGG-GugGU--UCU- -5'
14029 3' -56.6 NC_003521.1 + 58851 0.71 0.740862
Target:  5'- uGGCGCGgaugcccaGCAGGUAaaGGCCCAC-GAGAg -3'
miRNA:   3'- -CCGCGC--------UGUCCAUc-UCGGGUGgUUCU- -5'
14029 3' -56.6 NC_003521.1 + 59565 0.7 0.795397
Target:  5'- cGGCGCcGCGGGgguuucguccgAGaAGCgCGCCAAGAa -3'
miRNA:   3'- -CCGCGcUGUCCa----------UC-UCGgGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 59666 0.68 0.884154
Target:  5'- uGGCGCgccuggaggagcucaGACgccAGGUGGAGCCCuACCu--- -3'
miRNA:   3'- -CCGCG---------------CUG---UCCAUCUCGGG-UGGuucu -5'
14029 3' -56.6 NC_003521.1 + 68760 0.75 0.498283
Target:  5'- cGUGgGGCAGuucgaGGAGCCCGCCGAGAc -3'
miRNA:   3'- cCGCgCUGUCca---UCUCGGGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 70568 0.66 0.933858
Target:  5'- cGCGCaGAaagcgcuGGUAGAGCCgguCGCCGAGc -3'
miRNA:   3'- cCGCG-CUgu-----CCAUCUCGG---GUGGUUCu -5'
14029 3' -56.6 NC_003521.1 + 72784 0.68 0.900887
Target:  5'- gGGCGUcuaccaGAUguGGGUcucGGGCgCCACCAAGAa -3'
miRNA:   3'- -CCGCG------CUG--UCCAu--CUCG-GGUGGUUCU- -5'
14029 3' -56.6 NC_003521.1 + 74906 0.66 0.951402
Target:  5'- cGGUgGCGGC-GGUGGAGUCgGCCcGGc -3'
miRNA:   3'- -CCG-CGCUGuCCAUCUCGGgUGGuUCu -5'
14029 3' -56.6 NC_003521.1 + 76194 0.71 0.76864
Target:  5'- aGGCGCcACAGGaUGGgccagaAGCCCGCCGGc- -3'
miRNA:   3'- -CCGCGcUGUCC-AUC------UCGGGUGGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.