miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 36304 0.66 0.61721
Target:  5'- aGGCC-GGGUGgGGCGCacccucagucgggGCGUGG-GGa -3'
miRNA:   3'- -CCGGaCCCGCaCCGCGa------------CGCGCCgCC- -5'
14029 5' -65.3 NC_003521.1 + 166639 0.66 0.611642
Target:  5'- gGGCCgc-GCGccgGGCGCcgcgGCGCaGCGGc -3'
miRNA:   3'- -CCGGaccCGCa--CCGCGa---CGCGcCGCC- -5'
14029 5' -65.3 NC_003521.1 + 195195 0.66 0.611642
Target:  5'- aGCCgGcGGCgGUGGcCGuCUGCGuCGGCGc -3'
miRNA:   3'- cCGGaC-CCG-CACC-GC-GACGC-GCCGCc -5'
14029 5' -65.3 NC_003521.1 + 28833 0.66 0.611642
Target:  5'- uGUCUGcGGCGccUGGacgacgaGCUGCGgCGGCGcGg -3'
miRNA:   3'- cCGGAC-CCGC--ACCg------CGACGC-GCCGC-C- -5'
14029 5' -65.3 NC_003521.1 + 126777 0.66 0.611642
Target:  5'- cGGCa--GGCccUGGCGCUGCGCG-UGGu -3'
miRNA:   3'- -CCGgacCCGc-ACCGCGACGCGCcGCC- -5'
14029 5' -65.3 NC_003521.1 + 101473 0.66 0.611642
Target:  5'- cGCCucguagUGGcGCGUgaGGUGCUcgaGCaGCGGCGGc -3'
miRNA:   3'- cCGG------ACC-CGCA--CCGCGA---CG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 102868 0.66 0.611642
Target:  5'- aGGUCUGGGcCGUgcguagcgaGGCGCagagGCGCaGCa- -3'
miRNA:   3'- -CCGGACCC-GCA---------CCGCGa---CGCGcCGcc -5'
14029 5' -65.3 NC_003521.1 + 134071 0.66 0.610714
Target:  5'- cGCCUGGGCGcccUGGaCGCggagGUGUccauccaggaccuGGUGGc -3'
miRNA:   3'- cCGGACCCGC---ACC-GCGa---CGCG-------------CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 153090 0.66 0.603299
Target:  5'- gGGCCgGGGCccaccacgccgccgGGCGC-GCGCGaCGGc -3'
miRNA:   3'- -CCGGaCCCGca------------CCGCGaCGCGCcGCC- -5'
14029 5' -65.3 NC_003521.1 + 91745 0.66 0.602373
Target:  5'- aGGCUgaGGGCGU-GCGagaGCGCGGCc- -3'
miRNA:   3'- -CCGGa-CCCGCAcCGCga-CGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 115549 0.66 0.602373
Target:  5'- cGCCUgacGGaGCGccGUGCUGCGCGGaCGu -3'
miRNA:   3'- cCGGA---CC-CGCacCGCGACGCGCC-GCc -5'
14029 5' -65.3 NC_003521.1 + 36784 0.66 0.599596
Target:  5'- uGGCa-GGGCcacGCGCUGCGgagccgcucgcggaCGGCGGa -3'
miRNA:   3'- -CCGgaCCCGcacCGCGACGC--------------GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 212067 0.67 0.593123
Target:  5'- cGCUaGGGCgGUGGCGCggccCGCGcGCGu -3'
miRNA:   3'- cCGGaCCCG-CACCGCGac--GCGC-CGCc -5'
14029 5' -65.3 NC_003521.1 + 198775 0.67 0.593123
Target:  5'- cGCUcgUGGGCGaGGUggguagcaGCUGCGUGGUGc -3'
miRNA:   3'- cCGG--ACCCGCaCCG--------CGACGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 100503 0.67 0.593123
Target:  5'- uGGCaccgcGGGCGUcGGaCGgUGCacgGUGGCGGg -3'
miRNA:   3'- -CCGga---CCCGCA-CC-GCgACG---CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 127511 0.67 0.592199
Target:  5'- uGGCCaccagguUGcGGUaGUGGaagaGCaUGUGCGGCGGc -3'
miRNA:   3'- -CCGG-------AC-CCG-CACCg---CG-ACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 100809 0.67 0.592199
Target:  5'- cGCCUGGGCugcgacuGUGauUGUUGCGCGG-GGa -3'
miRNA:   3'- cCGGACCCG-------CACc-GCGACGCGCCgCC- -5'
14029 5' -65.3 NC_003521.1 + 165011 0.67 0.583896
Target:  5'- cGGCCgcaaGGacagguuccucaGCaUGGUGCUGcCGCGGCGu -3'
miRNA:   3'- -CCGGa---CC------------CGcACCGCGAC-GCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 98613 0.67 0.583896
Target:  5'- aGGCCauGGCGaggagGGCGagaGCgGCGGCGGc -3'
miRNA:   3'- -CCGGacCCGCa----CCGCga-CG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 101622 0.67 0.583896
Target:  5'- cGGCCaGGGCccGGCGCUgguaGCGCGucacguucaGCGa -3'
miRNA:   3'- -CCGGaCCCGcaCCGCGA----CGCGC---------CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.