miRNA display CGI


Results 21 - 40 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 150680 0.66 0.630212
Target:  5'- cGGCgccgcugcugCUGGGUGc--UGCUGCGCcGGCGGc -3'
miRNA:   3'- -CCG----------GACCCGCaccGCGACGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 91958 0.66 0.630212
Target:  5'- aGGCCa-GGC-UGGCGUagcugGCGCGGUGc -3'
miRNA:   3'- -CCGGacCCGcACCGCGa----CGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 183898 0.66 0.630212
Target:  5'- aGGCCgaggugcugGaGGCGgugcugcGGCGCUGuCGCGaCGGc -3'
miRNA:   3'- -CCGGa--------C-CCGCa------CCGCGAC-GCGCcGCC- -5'
14029 5' -65.3 NC_003521.1 + 80007 0.66 0.630212
Target:  5'- gGGCUUGGGC--GGCuuCUGCuGCGGCu- -3'
miRNA:   3'- -CCGGACCCGcaCCGc-GACG-CGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 135228 0.66 0.630212
Target:  5'- cGCCUGaGCGgcuGCGCcG-GCGGCGGc -3'
miRNA:   3'- cCGGACcCGCac-CGCGaCgCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 13895 0.66 0.630212
Target:  5'- cGCCgggGGGCccGGCGCggaggGgGCcGCGGa -3'
miRNA:   3'- cCGGa--CCCGcaCCGCGa----CgCGcCGCC- -5'
14029 5' -65.3 NC_003521.1 + 46552 0.66 0.630212
Target:  5'- gGGCCUc-GCGccgGGUGCUGaaGCGGUGGu -3'
miRNA:   3'- -CCGGAccCGCa--CCGCGACg-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 115376 0.66 0.630212
Target:  5'- uGGCCaGGGcCGgcauGUGCaggGCGCgGGCGGc -3'
miRNA:   3'- -CCGGaCCC-GCac--CGCGa--CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 144144 0.66 0.630212
Target:  5'- cGCCUGGGCuccgaGGCGUUGCucuucaagcacGCcGGCGc -3'
miRNA:   3'- cCGGACCCGca---CCGCGACG-----------CG-CCGCc -5'
14029 5' -65.3 NC_003521.1 + 78130 0.66 0.630212
Target:  5'- -aCCUuGGUG-GGCGCguuaGCgGCGGCGGc -3'
miRNA:   3'- ccGGAcCCGCaCCGCGa---CG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 206429 0.66 0.630212
Target:  5'- -uCCaacgGGGCGUGGUGUagcgauugacgUGgGCGGgGGa -3'
miRNA:   3'- ccGGa---CCCGCACCGCG-----------ACgCGCCgCC- -5'
14029 5' -65.3 NC_003521.1 + 112381 0.66 0.624638
Target:  5'- cGCCUGGGCGa-GCGCUcgGUcauccuggagaaccuGCGGCGc -3'
miRNA:   3'- cCGGACCCGCacCGCGA--CG---------------CGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 13972 0.66 0.620923
Target:  5'- aGCCcugaUGGGCcugcccGGCGCg--GCGGCGGg -3'
miRNA:   3'- cCGG----ACCCGca----CCGCGacgCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 150464 0.66 0.620923
Target:  5'- uGGUCUGGG-GcGGCGa-GCGCcuGGUGGg -3'
miRNA:   3'- -CCGGACCCgCaCCGCgaCGCG--CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 120902 0.66 0.620923
Target:  5'- uGGUCggGGGCGgcuGCuugcguuugcgGCUGCccGCGGCGGc -3'
miRNA:   3'- -CCGGa-CCCGCac-CG-----------CGACG--CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 105931 0.66 0.620923
Target:  5'- cGGUCUGcGUGUGGC-CgGCGCGGauGa -3'
miRNA:   3'- -CCGGACcCGCACCGcGaCGCGCCgcC- -5'
14029 5' -65.3 NC_003521.1 + 101679 0.66 0.619995
Target:  5'- uGGCgUcGGGCGaggGGCagaucuuguccuGUacgcucagcacgaUGCGCGGCGGg -3'
miRNA:   3'- -CCGgA-CCCGCa--CCG------------CG-------------ACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 98424 0.66 0.619995
Target:  5'- uGGCCaGGGCGgccagGGCcgcggccuccuggGCUacguuggaggagGCgGCGGCGGc -3'
miRNA:   3'- -CCGGaCCCGCa----CCG-------------CGA------------CG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 54998 0.66 0.619995
Target:  5'- uGGCCgacuuguaGGGCuuaaGGCGCaGCGCcagcgucGGCGGc -3'
miRNA:   3'- -CCGGa-------CCCGca--CCGCGaCGCG-------CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 204735 0.66 0.618138
Target:  5'- uGGCgaGGGUGgugauggaGGCGCcgccgccgcccuguUGUGuCGGCGGc -3'
miRNA:   3'- -CCGgaCCCGCa-------CCGCG--------------ACGC-GCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.